Erigeron canadensis (horseweed): 122588413
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Entry
122588413 CDS
T07610
Name
(RefSeq) tetratricopeptide repeat protein SKI3 isoform X1
KO
K12600
superkiller protein 3
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122588413
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecad03019
]
122588413
Messenger RNA biogenesis [BR:
ecad03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
122588413
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_11
TPR_1
TPR_2
TPR_17
TPR_12
TPR_16
TPR_19
TPR_14
TPR_6
TPR_8
TPR_7
TPR_9
TPR_15
PPR
TPR_20
Y2_Tnp
BTAD
Motif
Other DBs
NCBI-GeneID:
122588413
NCBI-ProteinID:
XP_043616456
LinkDB
All DBs
Position
2:complement(30642088..30657286)
Genome browser
AA seq
1204 aa
AA seq
DB search
MPKTLDFFVKLNDDSEVLVLGIWDLMASSRQSFIEGEDEGKESQVDSVFMQLKEAVAANP
DDPSAHFNLGLLFWKRIGEEAKEKAAEHFVIAAKLNPQDANAFRYLGHYYSKVSVDKQRA
LKCYQRALTLSPQDSESGELMCDLLDKEGKESLEIAVCREASGKSPRAFWAFRRLGFLQV
HQKKWSEAVQSLQQAIRGYPTSADLWEALGLAYQRLSMFTAAIKSYARAIELEESRVFAL
IESGYVFLMLGSHRKGVEQFQKALQISSENVAAHYGLGCGLLELSKECISSGAFKWGASI
LEEASNVTNTGTCLAKNVSSMWKLHGDIQLTYAKCFPWMDEDIILETNEKALTASIYSWK
NTCSSAALCARRSYQQALHLAPWQANIYTDIAITIDVINSFKEEENHDLIKRKLPEKMIL
GGLLLESHNNEFWVALGCLSHHVELKQHAFIRSLQLDVSLAAAWAYLGKLYREQGEKKLA
QDAFDRARSIDPSLALPWAGMSADMSIREIKADEAYDCCLRAVQILPLPEFQMGLAKLAL
LSGQLSSSEVFGPIRQALHHAPQYPECHNLLGLVCEARCDYLSAITSYRLARCAVNTSSR
DTQKLLDISLNLARTCCKAGRAYEAVQICEELKKKGVLDREGLHIYALSSWQLGKNDQAL
SVVRILAASVKSLEPKLASTSISFICRMLYYISGREAVMASILKMPTDLFKSSKVSFVVS
AIHILAQSNQLEQVVANSRSSLSNHDEITGMHFLITLSKLVKSGSEDHLGVQNGINHLTK
TLHKYPNSYLLRNFLGYLLICSNEQKDTHLSTRCFTVRNTPSECPKEESLRRAPEILGAS
AVACYTTGNLNYKYSFPSCKNQSTHQHGSLKLMQRWYHQEPWNKNARYLLILNYIQKARE
ERYPQHICMGLERLTNLALSDEFREYQKFQLSLCASEISLQSGNQVASVNHAKSASKLSL
PDGYLFFSHLQLCRAYAAEDHRDLLREEYMRCLDLRTDYHIGFTCLKYIECLYELQRDGN
IIELMFEECSKDIKYSSNIWTAILKLVQGLIAVWNQDFLGAEELFAHACSLNGSESCLFL
CHGAICMELARQQCNSDYLLLAVGSLKKARDVSLSPIPILQLLLAQAEASLGYKGQWEHY
LKLEWSSWPPERRPAEVYLQMHLLLKSSEDGRMKQYQKNPLRWILQAIHMNPSCSRYWKA
LQNS
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
atgcccaagactttagacttctttgtcaaactcaatgatgactctgaagtactagtatta
ggaatttgggatctgatggcaagttcaaggcaatcattcattgagggcgaggatgaagga
aaggagagtcaagtagattctgttttcatgcagttgaaggaagctgttgctgccaacccg
gacgatccatctgcccatttcaatctcggtttgctcttctggaagcggattggagaagaa
gccaaggaaaaagcagcagagcattttgtgattgcagcaaaactcaaccctcaagatgca
aatgcttttaggtatttgggtcattactatagcaaagtttcagttgataaacaaagagct
ctcaaatgttatcaaagagctctcacactttctcctcaagattccgaatctggggaattg
atgtgtgacttgttggacaaagaaggaaaagagagcttagagattgccgtttgtcgtgaa
gcttcagggaagtcgccaagagcgttttgggcttttcgcagactaggttttttgcaggtc
catcagaaaaaatggtctgaagcagttcaaagtcttcagcaggccattagaggatatcct
acgtctgctgatttatgggaggctttaggtcttgcctatcagcgattgagtatgttcaca
gcagctattaagtcatatgctcgagctattgagttggaagagtcaagagtatttgccttg
attgagagcggatatgtcttcttgatgcttggttcacaccgaaagggagttgagcagttt
cagaaagctttacagatatcatctgaaaatgtagccgcacactatgggcttggatgtggg
cttcttgagttatcaaaggaatgtataagttcaggtgcatttaaatggggagcttcaata
ttagaggaggcatcaaatgtcacaaacactggtacatgtttggccaaaaatgtttcatcc
atgtggaagttgcatggtgatattcagcttacatatgcaaagtgtttcccgtggatggat
gaagacattatcttagaaacaaatgagaaagctttgactgcttccatatattcatggaaa
aatacctgttcttcagctgcactttgtgccagacgttcctatcaacaagctctgcatttg
gctccatggcaagctaacatctacacagatattgctatcacaatagatgtcataaactct
tttaaagaggaggagaatcatgaccttatcaaaaggaagttacctgagaaaatgattcta
gggggattattacttgagagtcataataatgagttctgggttgcattgggatgcttatca
catcatgtggagttgaaacaacatgcttttatcaggtcactacagttggatgtctcatta
gctgctgcttgggcatatcttgggaagttgtacagagagcaaggtgaaaagaaattggcc
caagatgcatttgatcgtgccaggagtattgatccttcgcttgcattaccgtgggcaggc
atgtcagctgatatgtccattagggaaatcaaggcagatgaagcttatgattgttgttta
cgtgcagtccagatactgccgcttccagaatttcagatgggtcttgcaaagcttgctctg
ctttctggtcaactttcgtcttcggaggtatttggacccatacgccaagccttgcatcat
gcaccacaatatcccgaatgtcacaatcttcttggtcttgtttgtgaggcccgatgcgat
tatctatctgctattacctcttataggttagcacgttgtgcagtcaacacttcctctcgt
gacactcaaaaacttcttgatatatctttaaatttggcaaggacatgctgtaaggctggt
agagcttatgaagcggtgcaaatatgtgaagaattaaagaaaaaaggtgttcttgaccgg
gagggtttgcatatatatgctttatcttcatggcaacttggcaaaaatgatcaggctttg
tctgttgtgagaattctagctgctagtgtcaaatcattggaaccaaagttggcatccacc
tccataagtttcatatgtagaatgctttattacatttctggacgggaagcagtgatggca
agcattctgaaaatgcccacagatttattcaaaagttcaaaagttagttttgtggtatct
gccattcatattttggctcaaagcaatcagcttgagcaagttgtggccaatagtcgatct
tccttatcaaatcatgatgaaattactggaatgcattttttaataacactaagtaaattg
gtaaaaagtggttcagaggatcatttgggagttcagaatgggataaatcaccttacgaaa
actctacataaataccctaatagttatctgttaaggaactttctgggatatcttttaatc
tgtagtaatgaacagaaagatactcacttgtctactagatgtttcactgtgagaaatact
ccttcagagtgtcccaaggaagagagtttaagacgtgcacctgagatccttggtgccagt
gctgttgcctgctatacaaccggcaatctaaactataaatactcttttccttcttgtaaa
aaccaatcaacacatcagcatggatctcttaaattaatgcaaaggtggtaccatcaagaa
ccatggaataaaaatgcaagatacctgctaattcttaactatattcagaaagcacgtgaa
gagagataccctcagcatatatgcatgggacttgaacgattgactaatctggctctttca
gacgaatttcgtgaatatcaaaagtttcaactttctctttgtgcttctgagatatcttta
caaagtggaaaccaggttgccagcgtaaatcatgctaaaagtgcttcaaagctttctctg
cctgatgggtatctcttcttttcccacttgcaattatgtcgtgcctatgctgcagaagat
caccgggacctcttacgtgaagagtatatgagatgtttggatctgagaacagattatcat
attggttttacatgtctaaaatatattgaatgtctctatgagctacaaagagatggaaat
ataattgaattgatgtttgaagaatgttcaaaggatatcaagtattcatcgaatatctgg
acggccatattaaaattagtccagggcctgattgctgtttggaatcaggattttcttggg
gccgaggagttgtttgcacatgcttgttcattgaatggttctgaaagctgtctgtttttg
tgtcatggtgccatctgtatggaactagccagacagcaatgcaactcagactacttgctg
cttgccgttgggagtctgaagaaagctagagatgtttctctttccccgataccgatcctg
caactgttgctagcacaagcagaagcaagcctcggatataaaggccaatgggaacattac
cttaagcttgaatggtcgtcttggcccccagagaggaggcccgctgaggtctatcttcaa
atgcatttgcttctaaaatcttccgaagatggaagaatgaaacagtatcagaaaaatcct
ttgagatggattcttcaagcaatacacatgaatccatcttgttcaagatattggaaagct
ttacagaattcgtga
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integrated database retrieval system
