Erigeron canadensis (horseweed): 122590595
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Entry
122590595 CDS
T07610
Name
(RefSeq) DNA polymerase lambda isoform X1
KO
K03512
DNA polymerase lambda [EC:
2.7.7.7
4.2.99.-]
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03410
Base excision repair
ecad03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
122590595
03450 Non-homologous end-joining
122590595
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ecad03400
]
122590595
Enzymes [BR:
ecad01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
122590595
DNA repair and recombination proteins [BR:
ecad03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
122590595
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
X-family DNA polymerases
122590595
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B_palm
DNA_pol_B_thumb
DNA_pol_lambd_f
HHH_8
HHH_5
NTP_transf_2
HHH
IMS_HHH
Cdd1
Motif
Other DBs
NCBI-GeneID:
122590595
NCBI-ProteinID:
XP_043618720
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All DBs
Position
3:complement(23943583..23954603)
Genome browser
AA seq
539 aa
AA seq
DB search
MAPKARSDPNGIFSGMVVFLVDNGVQRRRLQIWQQKLVQLGAIIEEENLTRNVTHIFALN
SDSLEQKFGPNLLRRFKGVILLYQWLEDSLRLGEKVSDESYTIQLDSCQNSHSNSSKENP
VESADVKESNASQLHPCKKLKSSPKNSEGSCSEIKDKSFNDSVDGASRIVSSFKDNSNLG
RSPSISQVNPPAQQSSVSAPDATLPYHPPDLNRNITEIFSKLINIYRALGEDRRSFSYYK
AIPVIERLPFKVESVDQVKDLPGIGKSMQDHIHEIVTTGKLSKLEHFESDEKVRTISLFG
EVWGIGPATALKLYEKGHRSLDDLKSDDTLTTSQRLGLKYFDDIRTRIPRNEVQEMDHLL
QKAAQDVLPGVSVVCGGSYRRGKATCGDLDIIVTHPDGKSHIGFLPKYVNHLKDMNFLRE
DLVFSIHSEQDTDSGIDTYFGLCTYPGQELRHRIDLKVYPKDIYPFGLIHWTGNDVVNRR
LRILAESKGFRLDDNGLFPATHGSGGKRVSASTSLKFNSEKEVFEFLGFPWLEPHERNI
NT seq
1620 nt
NT seq
+upstream
nt +downstream
nt
atggcgccaaaggctcgttcggatcctaacggaatattctccggaatggtcgtcttcctc
gttgataacggcgttcaacgacgtcgtttacagatatggcagcaaaaactagtacagttg
ggagcaatcatagaagaagaaaatttgacccgaaatgtcactcatatattcgcacttaat
tcggactcacttgaacaaaaatttggccctaacttattacgccgattcaaaggggtcatt
cttctttatcaatggttagaggacagtttgaggctaggagagaaagttagcgatgaatca
tacacaatccagttggattcatgtcaaaattcccacagtaactcctctaaagagaaccct
gttgaatctgctgatgtaaaagaatcaaatgcaagtcagttacacccttgtaaaaagctg
aagtcctcacccaaaaactcagaaggttcctgctcagaaataaaagataagtcatttaat
gactcagtcgatggtgcttcacgcattgtttctagctttaaagataattcaaaccttggg
aggtctccaagcattagccaagtcaaccctcctgctcaacagagctctgtcagtgcacca
gatgctaccttgccatatcaccctcccgacttaaatagaaatatcaccgaaatattcagc
aagcttatcaatatttatagagctttgggtgaggatcgacggtccttcagttattacaag
gccattccagttattgaaaggttgccatttaaagttgaaagtgtggatcaagtcaaagac
ttgcctggtatcgggaaatcaatgcaggatcatatacatgagattgtgacgactgggaaa
ttgtccaagttggaacacttcgagagtgacgaaaaggtacgtacaattagcttgtttggg
gaagtatggggcattggtccagcaaccgcattgaaactgtatgaaaaaggacacaggagt
ctggatgatctaaaaagtgatgatacattgacgacttcacaacgattggggttgaaatat
tttgatgatattagaacaaggataccacgtaatgaggtgcaagagatggatcacttgcta
cagaaagctgcacaagatgttttacctggagtaagtgttgtgtgtgggggatcatacaga
cgtggaaaggctacttgtggggatctggatattatagttacacatcctgatggaaaaagt
catataggttttctaccaaagtatgttaatcatttgaaagatatgaactttttaagagag
gatctggtcttcagtattcacagtgagcaggatactgactctgggattgatacatacttt
ggtctttgcacatatcctggtcaggagcttcgacatcgtattgatttgaaggtataccca
aaggatatatatccttttgggctaatacattggacggggaatgatgtggtgaacagaaga
ctgagaatacttgcagaatccaaagggttccgactggatgacaatggactgttccctgca
actcatggttccggaggaaaaagggtcagcgccagtacaagcttgaagttcaactctgaa
aaggaagtgtttgaatttcttggatttccctggctcgaaccacatgaacggaatatttga
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