Erigeron canadensis (horseweed): 122590996
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Entry
122590996 CDS
T07610
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122590996
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ecad03041
]
122590996
Enzymes [BR:
ecad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122590996
Spliceosome [BR:
ecad03041
]
Complex A
U2 snRNP components
U2 related factors
122590996
Complex B
122590996
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
122590996
NCBI-ProteinID:
XP_043619110
LinkDB
All DBs
Position
3:42711834..42717528
Genome browser
AA seq
1083 aa
AA seq
DB search
MEESKHKSSKKDDYAKKDEEVKHKERHRDREKERNGGGDRRRERERERERSVDEKKHKER
HRDKEKEKEKERERKEREREKERERERERAKEKENRERERAKEREREKEREREREKERER
RERKEREDRDREKMREKRREAERDHGGIDDVKERDRKRRRRDDDYREDREREREKEHNAK
VSSRRREDSVDKKVDENLSDKKEARTREEAMEEEQRKLDDEMEKRRRRVQEWQEKRRKKE
ETEGEQAGVTGETAGKTWTLDGESDDEEAGPVENDEGEMDVDEKVNGATENGDGVVKGLD
NGVTVAAAPIGGNTAEDEIDPLDAYMNSMVIPEVNKLSTAEISGMEQTSSDSKRNEKIQN
NGKQLKKSTMGRIIPGEDSDSEFPAMDDEDPLEDEDDDDFMKRVKKTKVEKLSLVDHSKI
NYLEFRKNFYIEVKEIQQMTSEEVAAYRKELELKIHGKDVPKPIKTWHQTGLTTRILDTI
KKLKYDKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIMDQPELEAGDGPI
GLIMAPTRELVQQIHSDIRKFTKVLGLHCVPVYGGSGVAQQISDLKRGAEIVVCTPGRMI
DILCTSAGKITNLRRVSYLVMDEADRMFDMGFEPQITRIVQNTQPKRQTVLFSATFPRQV
EVLARKVVINRPVEIQVGGRSVVNKDITQLVEVRPENERFFRLLELLGEWCEKGKTLIFV
QSQEKCDSLFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSIAARGLDVK
ELELVINYDVPNHYEDYVHRVGRTGRAGRKGCAVTFLSTDDERYAPDLVKALELSNQVVP
DDLKALADAFMAKVNQGLVQAHGTGYGGSGFKFNEEEDEVRKAAKKAQAREYGFEEDKSD
SDDDDDGVRKAGGDISQQAVLAQAAALAAASQQPSTSAGPATLTGVPVVAGNDGAARAAA
LAAAMNLQHNLARIQADSLPEHYEAELEINDFPQNARWKVTHKETLGPISEWTGAAITTR
GQYVQPGRIPAPGERKLYLFIEGGTEQSVKRAKTELKRVLEDITAQALSLPSSQPGRYSL
FEK
NT seq
3252 nt
NT seq
+upstream
nt +downstream
nt
atggaagaatcgaaacataaatctagcaagaaggatgattatgctaagaaagatgaagag
gtgaaacataaagagaggcatagggatcgagagaaggaacgtaatggcggcggtgatagg
cgtagagagagggaaagggagagggaaaggagtgttgatgagaagaaacataaagagagg
cacagagataaggagaaggagaaggagaaggaaagggagaggaaagagagggagagagag
aaggagagggaacgggaacgggaacgggctaaagagaaagagaatcgagaacgagagagg
gcgaaagagagggaaagggagaaggagagggagagggaaagagagaaggaaagagagagg
agggagagaaaggagagggaagatagggatagggaaaagatgagggaaaaacggagagaa
gcggagagggatcatggtggaattgatgatgtgaaagaacgagataggaagaggcgaagg
agagacgatgattacagggaggacagggaaagagaacgtgaaaaggaacataatgctaag
gtttctagtagacggagggaagatagtgtagataaaaaggtcgatgaaaatttatcggat
aagaaagaggcgaggacacgtgaagaggccatggaggaagaacaaaggaaattggatgat
gagatggagaagaggaggaggagggtgcaagaatggcaggaaaagcgacgaaagaaagag
gaaactgaaggtgaacaggctggggtgacgggggaaactgcaggtaagacatggactcta
gacggggaatctgatgatgaagaagctggaccggttgagaatgatgaaggggagatggat
gtggatgaaaaggtgaatggtgccactgaaaatggagatggtgttgttaaaggattagat
aatggtgttactgtggctgctgcaccgattggtggcaatactgccgaggatgaaattgat
cctttggatgcatatatgaactccatggtgataccagaagttaacaaattgagcactgct
gagatttctggtatggaacaaacgagctcagattcaaagagaaatgaaaagattcagaac
aatgggaagcagctgaaaaagagtacaatgggcaggatcattcctggtgaagattctgac
tcggaatttcctgctatggatgatgaagatcctctagaagatgaagacgatgatgacttc
atgaaaagagtgaagaagacaaaggttgagaagttatcgcttgttgatcactcaaagatc
aattaccttgaattcagaaagaatttttatattgaagtgaaggagatacagcaaatgact
tcagaagaggttgctgcttatagaaaagaattggagctaaagatacacggaaaagatgta
cccaagccgattaagacgtggcaccagactggattgacaactagaattttagacacaatc
aaaaagctgaaatatgataagccaatgcctattcaagctcaagcactgcctgttataatg
agtggccgagactgtataggtgtcgcaaaaacaggttctggtaaaaccttagcttttgtt
ttaccaatgttacgacatataatggatcagccggaacttgaggctggagatggacccatt
ggacttataatggcacccacaagagagcttgtacagcagattcacagtgatataagaaag
tttactaaggtattgggtctccattgtgtgcctgtgtatggaggttcaggtgttgcccaa
caaattagtgatcttaaaagaggggccgagattgttgtttgcaccccaggtaggatgatt
gacattctttgtactagtgctgggaaaatcacgaatcttagacgagtctcatatttggta
atggatgaggctgatcgtatgtttgacatgggttttgagccacaaatcaccagaattgtc
caaaacacccaacccaaacgtcagactgtgttattttccgctactttccctcgacaggtg
gaagtattggcccgaaaggtagttataaacagacctgtggagatacaggttggggggaga
agtgttgtgaataaagacataactcagctagtggaggtgaggccagaaaatgagaggttc
tttaggttgttagagctacttggagaatggtgtgagaaaggtaagactttaatattcgtc
caatcccaggaaaaatgtgattctttattcagggatctgctcaaacatggatatccctgc
ttgtcgctacacggggctaaagatcagactgatcgagaatctaccatttctgattttaag
agtaatgtatgcaatttactgattgcaaccagtattgctgctaggggtttggatgttaag
gagcttgagctagtgattaattatgacgttccaaatcattacgaagattatgttcatcgg
gttggccgtactggtagagctgggaggaaaggttgtgctgtcacatttttatccactgat
gacgaaagatatgcaccagatcttgtaaaagctttggaactatctaatcaagttgttccc
gatgacctgaaagctcttgctgatgcgtttatggcgaaggtaaatcagggacttgtgcaa
gctcacgggactggttatggtggaagtggttttaagtttaacgaggaggaggatgaagta
aggaaggcagcaaagaaagcacaggctagagaatatggatttgaagaagataaatctgat
tcagacgatgacgatgatggggtgcgaaaggcaggaggtgatatttctcagcaagctgtc
cttgcccaagctgctgctcttgctgcagccagtcaacagccttctactagtgcagggcct
gcaaccctgaccggtgttcctgtggtagctggcaatgatggggctgctagggctgcagca
ttggctgctgccatgaacttgcagcacaatttggcaaggattcaggccgattctttgcct
gagcattatgaagcagagttggagattaatgattttcctcaaaatgctaggtggaaggta
acacataaagaaactttgggtccaatttcagaatggactggggccgccatcaccactagg
ggccaatatgttcaacctggtaggatcccagctccaggggaaagaaaactctacttgttt
attgagggaggtactgaacaatctgtgaagagggccaaaacagaattgaagcgtgttttg
gaagacatcacagcacaagcattgtctcttccaagttctcaaccggggcgttattctttg
tttgagaaatag
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