Erigeron canadensis (horseweed): 122591032
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Entry
122591032 CDS
T07610
Name
(RefSeq) polyadenylation and cleavage factor homolog 4 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122591032
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ecad03021
]
122591032
03019 Messenger RNA biogenesis [BR:
ecad03019
]
122591032
Transcription machinery [BR:
ecad03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
122591032
Messenger RNA biogenesis [BR:
ecad03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
122591032
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
122591032
NCBI-ProteinID:
XP_043619155
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Position
3:complement(47115930..47122994)
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AA seq
898 aa
AA seq
DB search
MESASYLTNNNRSNGYRPTPNDSVTNSNTPIVDRFKALLKEREDEIRASNGGVDNDDVIV
LDTEDIVELYEAVLSELIVNSKPIITDLTIIAGAQRRHGAGIADAICARIIEVPTEHKLP
SLYLLDSIVKNIGSDYVRHFSARLPEVYCAAYRQVPPSHHSSMRHLFGTWSTVFPSSVLR
KIEVQLQFSPSSYQTSGLRDSESPRPAHGIHVNPKYLEARRQLESSTGDSKIQHARAIST
PKILEQTLIGFDEYESEAPGSTSYVGRTSFGSGHARPSSPALEDFSIVDSPRRVVEAASP
SHHGYGYGPGGVTAVDNDARDWRRLPVAGNGFDIQRPRALINAYGTDERNNTASQKSQHG
KNLTMNGLGSKVGRQTWQNAEEEEFEWENMSPTLVDRGRGSDPFSSAILLPGSSITGHPL
QANRSMSAKTDFGRVDWSNLEPLPSVAPNNALTLVSSDRGLKRKMTGFQNEPLDNPVSHY
PQDTLNHSQHYYNPRGQRPPLVDSYSGANPQYHSSSVSKVSWRPPLSIQKSQPVPVLPSQ
PFQKHIRIQYDMLNANSSTINDNALFSHQQQFETGDRRESSQLPQLSNQQILGQNTRLPT
QLSLSQEIRPNMVPPTLGYNATRPMHRGYAPQRFDAPGGTPGMQSSMPFHLHGVGLPPLP
PGPPPIPQHPLPIAPTHPGESGLSSLLGSLVAQGLLSMNKPALEQDSVGLEFDPDVLKAR
HESAINALYVDLPRQCKTCGLRFKLQEEHSNHMDWHVTKNRVSKNRKQKPSQKWFAKVSV
WLSSAEALGTDPVPGFLLPAENVVEQMGDEDMAVPADEDQNVCALCGEPFDDFYSDETEE
WMYRGAVYMNAPNGATISMDRSQLGPIVHAKCRSESSVAPVDDSGNNGQVLTGERLHS
NT seq
2697 nt
NT seq
+upstream
nt +downstream
nt
atggaatccgctagctatctaaccaacaataacagaagtaacggatacagaccaacccct
aacgattccgttacaaacagtaacactccaattgttgatcgattcaaagctttgttgaaa
gagcgtgaagatgaaattagggcttctaacggcggggttgacaatgatgatgtcatagta
ttggatactgaagatattgttgagttatatgaagccgtgctgtccgagctgatcgttaac
tcgaaaccgataataactgatcttactatcattgctggcgcccaaagacgacacggtgct
ggtattgctgatgctatttgtgcccggattattgaggttcccactgagcataaacttccc
tctttatatcttctagacagtattgtcaaaaatattggttcagattacgtgaggcacttt
tctgcccgtttgcctgaggtttactgtgcggcttacaggcaagtccccccaagtcaccat
tcttccatgcgccatctttttggtacctggtcgactgtatttccatcatctgttcttcgt
aagattgaagttcaattacaattttctccttcaagttatcaaacttctggcttaagagat
tccgaatctcctagaccagctcatggtatacatgtcaatccaaagtacttggaggcaaga
cgtcaacttgaaagctcaactggagatagtaaaattcaacatgcacgggcgatttcaact
ccaaagattcttgaacagactctcattggatttgatgaatacgaatctgaggcaccgggt
tcaactagttatgtgggccgtacttctttcgggtctggtcatgcacgaccttcatcaccc
gcacttgaagatttttctattgttgattctcctagaagggttgtcgaagcagcatcacca
tctcaccatggatatggttatggacccggtggtgtgactgctgtcgataatgatgcacgt
gactggcggagattgcctgttgcaggtaatggatttgatattcagagacctagagcttta
attaatgcatatggaactgatgagagaaataatacggcaagccagaagtctcaacatggg
aaaaatttaactatgaatgggttaggcagcaaggttggtcgacagacatggcaaaatgct
gaagaagaagaatttgagtgggaaaatatgagccctactttggtagatcgtggtcgtggt
tctgatccattttcttcagctatcttgctacctggaagctctataacaggtcatcctctt
caagctaatcggtctatgagtgcgaagactgattttggtagagtcgattggtctaatctg
gagccgcttccttcggttgcccctaacaatgcacttacgttggttagttctgatcgtgga
ttaaagaggaagatgactggatttcaaaatgagcctttagacaacccagtttctcattat
cctcaagatacattaaatcattctcaacattattacaatcctcgtgggcaaagacctcct
cttgtggatagctattcaggtgccaatccacaatatcactcatcttcggtatcaaaagta
tcctggcgccccccactaagtatacaaaaatctcaaccagttccagttctgccttctcag
ccttttcagaaacatatcaggattcaatatgacatgttgaatgctaatagttcaacaata
aatgacaatgcattgttttcgcatcagcagcagtttgaaacgggtgataggagagaatca
agtcaactacctcaactttccaatcagcaaatcctagggcagaacactagacttccgaca
caattatcgctgtctcaagagattcgaccaaatatggtaccacctactttaggttataat
gcaacacgacctatgcatcgtgggtatgctcctcaaagatttgatgcccctggaggtact
cctggaatgcaatcatccatgccttttcatttacatggtgtaggtttaccgcctttgcct
cctggcccacctccaattcctcaacatcctctaccaattgccccaacgcatccaggtgag
agtgggctttctagtctattaggttctcttgtagcgcaaggcctgctctcaatgaataaa
ccagctcttgaacaagactcggttggacttgagtttgatcctgatgttcttaaggcacgc
catgaatctgctataaatgctttatatgttgatctgcccagacaatgcaaaacatgcggt
cttcgttttaaattgcaagaagaacacagtaaccatatggactggcacgtcacaaagaac
cgggtatcaaaaaatcgtaagcaaaagccctcccagaagtggtttgctaaagttagtgtc
tggcttagtagtgcagaggcgttgggaactgatccagttcctggatttcttcttcctgct
gagaatgtcgtggaacagatgggtgatgaagatatggctgttcctgctgatgaggatcag
aatgtttgtgcactgtgtggagagccttttgatgatttttacagtgatgagacagaagaa
tggatgtataggggtgctgtgtacatgaatgctccaaatggagcaaccattagcatggat
agatctcaactaggtcctattgttcatgctaaatgcagatctgagtcttctgtggctccc
gtcgatgattctggcaacaatggacaggttctgaccggagagcggctgcatagttag
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