Erigeron canadensis (horseweed): 122592419
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Entry
122592419 CDS
T07610
Name
(RefSeq) SWI/SNF complex subunit SWI3D
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
122592419
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ecad03021
]
122592419
03036 Chromosome and associated proteins [BR:
ecad03036
]
122592419
Transcription machinery [BR:
ecad03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
122592419
Chromosome and associated proteins [BR:
ecad03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
122592419
PBAF complex
122592419
GBAF(ncBAF) complex
122592419
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
ZZ
Myb_DNA-bind_6
Motif
Other DBs
NCBI-GeneID:
122592419
NCBI-ProteinID:
XP_043620572
LinkDB
All DBs
Position
3:29884891..29892207
Genome browser
AA seq
1016 aa
AA seq
DB search
MEEKHNSPAKPTDPPPPSTADPPSSSRRRLKRKASTSNNNNNSNNNPTPKRQAREKHHQQ
QNQQQSPVLYGPIHNGPLTRARLQPNYVDSNVTASFWDAVVVENNSGGNSNNNNVGGVDL
KIQEEELIKRKEAWDALEAKIESQFDEFKLKDVNTSHFVPVSCGWFSWTKVHPLEEKALS
SFFNGKLENRTSEMYMEIRNAIVKRFHANPTTQIEEKDLLEISVGELDARKEVMEFLDYW
GLINYHPFPETDVTSSVGDPEETGKVKSLVQKLYEFEVEQLSLPAAPRSNFAIPALPSRL
PESMITDESVQPEGPSVEYHCNSCSADCSRKRYHCQKQADFDLCSECFNDGKFDSDMAPS
DFIIMEPGDAAGANSGKWTDQETLLLLEALELFKENWNEIAEHVATKTKAQCILHFVQMP
IEDTFRDCDDEDDTNDKEKTEKVETNADESDKKKEIAESNKENTDKKEVDQENAGKKEVD
QENTDKKEVDQENTGKKEVDQENADKKEVDEKNDDSKDAKETEEPKAVDGAPSNNNQPES
SPMEISEPADTNKLKDDRENGVNNIAVKALREAFDAVGSLSSLDEKLSFADAGNPVMAMA
AFLTRLVEPNLVTASARTSLKSVSKGGTGLQLSARHSFVLEDPADEKKPDDTESKANDTE
KKPDDMERKPDGAEKKTDDTERSMDIDVPEVVEEEVMKKKNDLVNDLKDKEGANVTRKEK
DNVLASSEKKEEPVLAEVVATKKGKNAGSRRKGSSKKDRVPVTEKSVVTEETNKQAHQDD
APSNSKKESADSFNGAPPLVVSQSTEAPKDEEMTEKAEPSQSTLAEKTENSEDVAAKDTN
TVDKRLLDSKDNSSMHKLTRAAVTAISAAAVKAKLLADQEEDHIRQLATALVEKQLYKLE
AKLAFFTEMDGVVSRAREQLERSKQRLYQERAQIIAARLGMSSANSTRPMAQSLPNRPGA
AFPNAGQRPPNPMNMTPQRPPLSRPMMGPTPPFSNPVGPSTLVGNSAQISTNQAMK
NT seq
3051 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaaaacacaactcaccggcgaaacccaccgacccaccaccaccatcaacggcg
gacccaccatcatcatcacgccgtcgtctaaaacgaaaagcctcaacttccaataacaat
aacaattccaacaacaacccgacaccaaaacgacaagcaagagaaaaacatcatcaacaa
caaaaccaacaacagtcaccagtgttatatggtccgatccataatgggccgttgaccaga
gcaaggttacagcctaattacgttgactcaaatgtaacggcgtcgttttgggatgcagtt
gtagtggaaaacaatagtggtgggaatagtaataacaataatgttggaggggtggatttg
aaaattcaagaagaggaattgattaagagaaaagaagcttgggatgctttggaagctaaa
attgaaagtcaatttgatgaatttaagttaaaagatgtcaacacttctcattttgttccg
gtttcttgtggttggttttcatggacaaaggttcatccattggaggagaaagcattatct
tctttcttcaacggaaaactggagaatcggacttctgaaatgtacatggaaatacggaat
gccattgtgaaaagatttcatgcaaaccccactacccaaatagaagaaaaggatcttttg
gagatatcagttggggaattggatgctaggaaagaggtgatggagtttttagactattgg
gggctgattaattaccatccgtttcccgagacagatgtcaccagctcggttggtgatcct
gaagaaactggaaaagtaaaatcattggtccagaaattgtacgagtttgaggtggaacag
ttgagtttgccagctgctcccaggagtaattttgcaattcctgcacttccatcgcggttg
cctgagtccatgataactgatgaatcggtgcagcctgagggaccatctgttgagtatcac
tgcaattcatgttcagctgattgctctcgtaagcgctatcactgtcagaagcaggcagat
tttgacttatgtagtgaatgcttcaatgacggcaagtttgactctgatatggccccatct
gattttattattatggagcctggtgatgctgctggtgcaaatagtgggaagtggacagat
caagagacattgctcctcctcgaagccctggaactcttcaaagagaactggaacgagatc
gctgaacatgttgccacaaaaacaaaagctcagtgtatcttacactttgttcaaatgcca
attgaagatacttttagggattgtgatgatgaagatgatacaaatgacaaagaaaaaact
gagaaggtagaaacaaatgcagatgaaagcgacaaaaagaaagaaatcgctgagagtaac
aaggaaaatactgacaaaaaagaagttgatcaggaaaatgctgggaagaaagaagttgat
caggaaaatactgataaaaaagaagttgaccaggaaaatactggcaaaaaagaagttgat
caggaaaatgctgacaaaaaagaagttgatgagaaaaatgatgattccaaagatgcaaaa
gaaaccgaggaaccaaaggccgttgatggcgctccatcaaataacaatcagcctgaatct
tctccaatggagatttcagaaccggcggatactaataaattgaaagatgatcgggaaaat
ggtgtgaacaatattgcagtgaaagcactcagagaagcatttgatgctgtggggtctctt
tcttcacttgatgagaaactttcttttgctgatgccggtaaccctgttatggcaatggca
gcattcctgactcggttggtggaacctaatttagtgactgcttctgcccgtacctctctg
aaatctgtgtctaaaggcggcacgggattgcagctgtcagcaagacattcctttgttctg
gaagatccagctgatgaaaagaaaccagatgacacggagagcaaagcaaatgacacagag
aagaaaccagatgacatggagaggaaaccagatggcgcagagaagaaaacagatgacaca
gagagatcaatggacatagatgtgccagaagtggtggaggaagaagtcatgaaaaagaag
aatgatttggtaaatgatctcaaggacaaagagggtgccaatgtaactcgaaaagagaaa
gacaatgtgttggcttcctccgaaaaaaaggaagagccagttctagcagaagtagtagct
acgaagaagggcaagaatgctggctcacggagaaagggttcttcaaagaaagacagggtt
ccagttactgagaaatcagttgttactgaagaaactaataaacaagctcatcaagatgat
gctccttcaaattctaaaaaggagtctgctgattcttttaatggtgctccaccgttagtg
gtttcccagtctaccgaggctccaaaggatgaggagatgacagaaaaggcagaaccttcc
caatctacattggctgaaaagactgaaaattcagaggatgttgcagcaaaagacactaat
actgtggacaaacgtcttctagacagtaaagacaactcaagtatgcataagctgacacgt
gcagctgttactgccatttctgctgcagctgttaaggcaaaactactggcagaccaagaa
gaggaccatattcgacagcttgccacagcattggtagagaagcagctgtacaaattggag
gctaagttggctttctttactgaaatggatggtgtcgtatcaagggctcgggaacaattg
gaaaggtcaaagcagagactctaccaagaacgggcccaaataattgctgccagattgggc
atgtcgtctgctaattctaccaggcctatggcacaatcgttaccaaacagaccaggtgcg
gcatttccaaatgctggacaaaggcctccaaatccgatgaacatgactcctcaaagacca
ccactttcaagacctatgatgggaccaacaccgcctttttcgaacccggtgggacccagc
acacttgtaggaaactctgctcagatttcaaccaaccaggcaatgaaataa
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