Erigeron canadensis (horseweed): 122592605
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Entry
122592605 CDS
T07610
Name
(RefSeq) endoribonuclease Dicer homolog 3a
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
ecad
Erigeron canadensis (horseweed)
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ecad03036
]
122592605
Chromosome and associated proteins [BR:
ecad03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
122592605
microRNA pathway
RISC loading complex
122592605
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
DEAD
Helicase_C
ResIII
PAZ
DND1_DSRM
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
122592605
NCBI-ProteinID:
XP_043620815
LinkDB
All DBs
Position
3:complement(6049095..6062244)
Genome browser
AA seq
1654 aa
AA seq
DB search
MSGNPPTNPLKRNFETMINHSQKHQSEDVMNNQLNLTPTEYQLDVFKVAMCRNTIARLDT
DAGKTTIAVMIIKEVALSLKSEPSDNKLIVFLAPTRKIVEQQYNVLREKTDLIVDFYHGS
KVGDIDGKKVDEWDGAVWEHETTKNRVMVMTPQILLDALRNAFINFEMISLLIIDECHRA
SGNHPYASIMKEFYLKAANKPKIFGMTATPVTKKVGVSSTEDCEAQITMLESVLDSQVYT
IQNRTELENVTPSALHIYSFYQPAKVDNVDLKGKMESSRLKFEEQLFKMQMSLQSNHKDA
TEKHEILRKRLSDDHSKIVYCIDELGLLCAYEAIKICIANNPKAVEECDLYKESCLKCLY
FLDETLSLISKCLPNGCEISFDVGCDYENMVAAGYISPKLCQLFHLLQSLGEATKVSCLV
FVERNLTAKVLDIFVKRISDLSSLEVSCLTGNTTSVDAMSLKLQKETLESFHSGKVNLLF
ATDIIEEGLDVPKCSTVIRFDIPKTVRSNVQSWGRTCQSGSQFIMMLERGNSKQREHVCD
IIRSEHSMDSSKKGDRGTSVVKPSNFKETETYYVEATGASVTVHSSVSLLHQYCSKLPAD
KLSTPKPSFQFLLVEDLYQCEMTLPPGAVFQTITGPPCKSSALSKQLVCLEACKRLHQMG
ALSDHLIPINECSSQNESSKNSNKPTSGAGTTKRKELHGTRPIRAVVGTWADEVVDGVNF
YAYTINFTCNIAEVKYSSFVLLIESKLDDDVANIEIDLYLVSKSVNCKVSSCVELHLSAE
QVEKGKCFQELFFNGIFGRLYIGSKHSDVSREFLPQTNQKLWIPSYMYLLLPLLSQDPFE
ISWNEIDSCVSVVEFVKNFSLLRAEKQSVDSIMMDSDDDDMVHFANRSVHKNDLEELVVL
AIHSGKIYSVLELLEQETANSPFDGDAKKFSSFTDYFFKKYEIDLKYPGQNLLLLKQSHR
AHNLLVDFNGEGILHGKKIRAESCKVNTNRQRYYARIPPELLVIIDARLAVTKSFYLLPS
LMHRLESLMLASQLREEISGHSTDLHISSSLILEAITTLRCNESFSMERLELLGDSVLKY
AVSCDLYLQYTNKHEGQLSSRRSWQVCNSTLYDLGIGCQLQGYIRDSAFDPTRWTAPGMF
PLRLCPCDHDVETTEVPIDPKYQSEDPKVLTGKCCDMGHRWLGSKTVSDCVEALVGAYFV
DGGLVGALHCMKWLGVSCDLDPSLVNKAIEIASLRAYTPKLDVIQSLESKLGYEFVVKGL
LLEAITHASDQGQGAGYCYERLEFLGDSVLDLIITWYLYKKHTDLYPGELTDLRSASVNN
ENFAYAAVRWNLHPHLQYRSGHLQSQITDYVKFVATSSTDTNSLQTKKSPKALGDLVESI
AGAILVDTKLNVDEVWHIFEPLLSPIVTPDKLELPPLRELLELCDSMGYFMKDVCCIKGD
NVMAELRLQLKDVLLTGNGTASTRKVARGQAALQLLKELEKRGISRKNQGHDNRDWEINS
ENIILSDTTSLKLDSTRNIKINLFDPPPKDTSIVNDCSMEEESNSMIEIPVIKSINTKKG
GPRSTLYELCKKMQWPMPTFTPSEQKSRSLIEIGEGVDKRTAFNSFESCISLTIPAYGVI
ELTGDPRADKKSSFDSAALLMLYELQRLGKLKIG
NT seq
4965 nt
NT seq
+upstream
nt +downstream
nt
atgtctggaaatccaccaacaaacccattgaaacgaaactttgaaaccatgatcaatcat
tcccaaaaacatcagtctgaagatgtaatgaataaccagcttaatttgacacctacagag
tatcagcttgatgtgtttaaggtggctatgtgtcgaaatacgatagcacgtcttgatacg
gatgccggaaaaacaacgatagctgttatgattataaaagaagttgcattgtcgcttaaa
agtgaaccatctgataacaagttaattgtttttttagccccaactcgaaagattgttgaa
cagcaatacaatgttcttagggaaaaaacagacctcatagttgatttttaccatgggtct
aaagtaggagatattgacggaaagaaggttgatgaatgggatggtgctgtatgggaacac
gagacaaccaaaaatagagtgatggttatgacacctcaaattttgttggatgccttgagg
aatgcatttatcaactttgaaatgataagtttattaattattgatgagtgtcatcgtgct
agtggcaatcatccttatgcaagcataatgaaggaattctatctcaaagctgctaacaaa
ccaaagatttttggcatgactgcaaccccagttactaaaaaagtaggtgtctcttcaact
gaagattgtgaagcccagattacaatgcttgaaagtgttctagattctcaggtctacaca
atacagaacaggacagaactagagaatgtcaccccatcagccttacatatatattctttc
tatcaaccagccaaggttgacaatgtggatctaaaaggcaaaatggaatcctcacgatta
aagtttgaagaacaactgttcaagatgcaaatgtcactgcaaagtaatcacaaagatgcc
actgaaaaacatgagattcttcgaaagaggctctctgatgatcactctaagatcgtttat
tgcattgatgaactgggccttttgtgtgcttatgaggctattaaaatttgtatagctaac
aacccgaaagctgttgaagagtgtgatctttataaagaaagctgcttaaagtgtttatat
tttcttgacgaaacattatcacttatctcaaaatgtttaccaaatggttgtgaaatttct
tttgatgttggatgtgattatgagaacatggtagcagctggatatatttcacctaagcta
tgtcaactttttcatcttctacaatcacttggggaagctacaaaagtatcgtgcctcgtt
tttgtagagagaaatttaacagctaaagttcttgacatatttgtgaagagaatttctgac
ttatcttctttggaagtttcttgtttgactggcaatacaacttcagttgatgcaatgtca
ctgaaactgcaaaaggagactcttgaatctttccattctgggaaggtgaatctactgttt
gctacggatattattgaggagggccttgacgtgccaaaatgttcaactgtgatccgtttt
gatatcccaaaaactgttcgaagcaatgtccaatcatggggacggacttgtcaaagtggc
tctcagtttatcatgatgcttgagaggggaaattcaaagcaaagagaacatgtttgtgat
atcattcgaagtgagcattccatggacagttctaaaaagggtgaccgtggtacttctgtt
gtaaagcctagtaacttcaaagaaacagaaacatattatgttgaggcaacgggagcttca
gtcactgtacattccagtgttagtctccttcatcaatactgttcgaaactcccagctgac
aagttgtccactccgaaaccaagtttccaatttttgctggtggaagatttataccagtgt
gaaatgactttaccacctggagctgtttttcaaacaataacgggtcctccttgtaagtca
tcagctctttcaaagcagcttgtatgcctagaggcctgtaaaaggttgcatcaaatggga
gcactctctgaccatcttatccctattaatgaatgttcgtcacagaatgaatcttctaaa
aatagtaataaaccaacttccggtgcagggactacaaaaaggaaagaattacatgggacc
agacccattcgagcagttgttggtacatgggccgatgaggtcgttgatggcgtgaatttt
tatgcatataccataaatttcacttgtaacattgctgaagtgaaatattcaagctttgtt
cttttgattgagtcaaagcttgatgatgatgtagcaaatattgaaattgatctatacctg
gtgtcgaagtctgtcaattgtaaggtttcttcatgtgtggaattgcatctcagtgcagaa
caggtagaaaaaggcaagtgcttccaagagctatttttcaatggaatatttggaagattg
tatattgggtccaaacattcagatgtttcaagagagttcttaccacaaaccaaccaaaaa
ttgtggatcccatcatacatgtatttgcttctgccattgttgtcgcaagatccgttcgag
atcagttggaacgagattgactcatgtgtatctgtagttgaattcgtcaagaacttttct
cttttaagggccgaaaagcagagcgtggattcgatcatgatggattctgatgacgatgat
atggttcattttgccaacagatctgttcataaaaatgatcttgaagaacttgtagttttg
gcgattcactctgggaaaatctactccgttcttgagcttcttgagcaagagaccgctaat
agtccttttgatggagatgctaaaaagttttcatcattcaccgactattttttcaagaag
tatgagattgatctaaaatacccgggacaaaatttgttgctgctaaagcaaagccatagg
gcacataaccttcttgtggacttcaatggtgaaggaattttgcatggaaagaagatacgg
gccgagagttgtaaggtgaatactaacagacaaagatattatgctcgtataccacccgaa
cttctagttattattgatgcgcgattagctgttacgaaatcgttctatctgctaccatca
ttaatgcaccggctcgagtctttaatgttggctagccagcttcgtgaggaaatcagtggc
cactctactgatttacacatttcaagttcactgattttggaagccatcacaactctcaga
tgcaatgaaagtttttctatggagcgactggagttgcttggtgattcagtgctgaagtat
gcagtgagctgtgatctttatcttcaatacaccaataaacatgaagggcaactgtcttct
cggcgatcatggcaagtttgtaattcgaccttgtacgatttgggaattggctgccagtta
cagggctacataagagatagtgcatttgatcctaccagatggactgcaccaggcatgttc
ccattacgactttgcccatgtgaccacgacgttgagacaacggaggtgcctattgacccc
aaataccagagtgaagatccaaaagttttgacagggaagtgttgtgatatgggccatcga
tggctgggttcaaagacagtatcagattgcgttgaggcccttgtaggagcttattttgtt
gatggtgggttggttggtgctcttcactgtatgaaatggcttggtgttagctgtgacctt
gatccatcacttgtcaataaagccattgaaattgcttcactccgtgcatatactccaaaa
cttgatgtcattcagagtttagagtcaaaactcgggtacgagtttgtagtgaagggtttg
ttgttggaagctataacacacgcatctgatcaaggccagggtgctggatactgttacgag
aggttagagtttcttggtgactcggtattagacctgattattacgtggtatctctacaaa
aagcacacagacctttatcctggagaactcacggatttacgttcagcatcagttaataat
gaaaacttcgcttatgctgctgtgagatggaatcttcatccacacctccagtatcgttcg
ggtcatctccaaagccagattacagactatgtaaagtttgtagctacctcttcgacggat
acaaactcactccagaccaagaaaagtcctaaggcacttggtgacctagttgagagtatt
gcgggggccatattagttgataccaaactaaatgttgatgaagtttggcatatctttgag
cctttattatctcccatagtaacacctgataaacttgagcttcctcctttacgtgaatta
ttggaattgtgcgactccatgggttatttcatgaaagacgtctgttgtatcaagggtgat
aacgtaatggccgagctacggttgcagctcaaagatgtcttattaactggaaatggcaca
gcttcaaccaggaaagttgcaaggggccaagctgctcttcagttattaaaagaactcgag
aaaagaggaatttcaaggaagaaccagggtcatgacaatagggactgggaaatcaacagt
gaaaatattattttaagtgacacaacctcattaaagttagattccaccaggaatataaag
ataaacctcttcgatcctccaccaaaggatacctccattgtcaatgattgttcaatggag
gaagaatccaattctatgattgaaattccagtaataaagtcaattaacacgaaaaagggt
ggaccaagatctacgctttacgagttgtgcaagaaaatgcagtggcctatgcccactttt
acaccatcagagcaaaaatcaagatccctaattgaaatcggcgaaggtgttgacaaaaga
acagcatttaatagctttgagtcttgtatcagtttaacgattcctgcttatggtgttatt
gaactcactggagatccacgagcagataaaaaaagttcttttgactctgctgcactatta
atgctctatgagcttcagcgactcgggaagctcaaaatcggttaa
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integrated database retrieval system
