Erigeron canadensis (horseweed): 122593737
Help
Entry
122593737 CDS
T07610
Name
(RefSeq) DNA ligase 4 isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
122593737
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ecad03400
]
122593737
Enzymes [BR:
ecad01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
122593737
DNA repair and recombination proteins [BR:
ecad03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
122593737
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
BRCT
DNA_ligase_A_C
PTCB-BRCT
RNA_ligase
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
122593737
NCBI-ProteinID:
XP_043622117
LinkDB
All DBs
Position
3:complement(5096755..5110680)
Genome browser
AA seq
1125 aa
AA seq
DB search
MSGNTKFSVMCSLFNWIQKSKTSSKKRSKFRKFLDTYCKPWDYFAAVRLILPNLDRERGS
YGLKESVLATCIIDALGMSRESADAVRLINWRKGGAKTGVNAGNFSLVAAEVLQRRQGMI
SGDLTIKEINDLLDRLASSENRAEKTSVLSDLIRNTNAQEMKWIVMIILKDLKLGISEKS
IFHEFHPDAEDLFNVTCDLKLVCERLRDRRQRHKRQDIEVGKAVRPQLALRVANAASAWK
KLHGKEVVIECKFDGDRIQIHKNGEEIHFYSRNFLDHPEYIHGMANIIKQNILVDRCILD
GEMLVWDTSNDRFAEFGLNQEIAKAAKEGLASERQLCYVAFDILYDGDTSVIHQSLKERQ
ELLKKVVNPVKGRLEILVPDGGLNVHTAAGEPCWSRIAHNIDDVETFFKRTIENRDEGIV
LKDLGSKWEPSDRSGKWLKLKPDYVRAGSDLDVLIIGGYYGSGRRGGQVAQFLVGLAERP
APNTYPRRFISFCRVGTGLSDEELDAVVNKLKPYFRKYEYPKKGPPNYYKVTNNSKERPD
VWIDSPEKSIILSITSDIRTIRSEVFAAPYSLRFPRIDKVRDDKPWHECLDVDSFVELVH
SSNHTTQWGENQQENKPKRAKSSRAANKKSGSSVPSHLLKTDVSQVKGETKILSDMMFYF
ANVPSTHTMDSLHKMVAENGGTFSMNLNNAVTHCIAAESRGIKFQAAKRHGDVIHYSWLL
DCCTQKKLIPLQPKYFLVLSESSKKKLQEDIDEFSDAYYMNIDIKDLEQLLNNINRSEDS
KTIDYYKKKYCPLDKWSRFSGCCMYFYVPANYLRSDWEAFLELSMRRMKLEVSFNGGKVS
NHISTATHMVVMSLPGLNVDFDTILKSFSSSERRLLRNKKLHLVNCQWLEDCFEKDQMLQ
EEDYSLRPIGSTESTSSDEKPLEVETFSSLKKEEDKKKKTEILEVPPSVTDGRKRRGRPT
KAKTSTRGKTGLNQPRRTRARSGNKAVKLHEYASEEDEVSLDEIHVEVDQEKQHEMQDPV
VEDTEPLKLDTYVSPYAQFTSEYGDNRGDNATNKESDKLEVMVDPVQAMLLDMIPSLEPK
TNESVILDPPVPKSETPAPTSDPNPGPSKKKKVSFRERAMELLKD
NT seq
3378 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggcaatacaaaattcagcgtgatgtgcagtttattcaactggattcaaaaatca
aaaacttcatcaaaaaaacggtctaaattccggaaatttctagacacttattgtaaaccc
tgggattatttcgcagcagtacgattgatccttccgaatctcgatagagagcgaggttct
tacggtttaaaggaatcagttttggcaacttgtataattgatgctttaggtatgtctaga
gaatctgctgatgccgttcgtcttattaattggcgtaaaggcggggctaaaaccggtgtt
aatgctggcaatttttcacttgtggcggccgaggttctacagaggaggcagggcatgatt
tctggggacctaactattaaagagataaatgacttgcttgatcgcttggcttcaagtgaa
aatagagcagagaagacttctgttctttctgatctgatcaggaacacaaatgcacaagaa
atgaagtggattgttatgattatccttaaagatctcaagttaggaatcagtgagaaaagt
atcttccacgaatttcaccctgatgctgaagacttgttcaatgtcacttgtgacctaaaa
ctagtttgtgaaaggttgagggaccgacgtcaacgccacaagcgccaggatatagaggtt
ggaaaagctgtgcgacctcaactggctttgagggttgctaatgcagctagtgcatggaaa
aagcttcacggaaaggaagttgtcattgagtgcaaatttgatggtgatcgcattcaaatc
cataagaacggagaagagatacatttttattctaggaattttcttgatcatccagaatat
atacacgggatggcaaatattatcaagcaaaatattctcgttgacaggtgtatacttgat
ggggaaatgttagtttgggacacatcaaatgaccgttttgctgaatttggcttaaatcaa
gaaatagccaaggctgcaaaggagggacttgctagtgagcgacagttatgttacgttgca
tttgatattttatatgatggagacaccagtgttatacatcaaagtctaaaggaacgtcag
gagctacttaaaaaggttgtgaacccagtcaagggacgtcttgagatattggttcctgat
ggtggtcttaatgttcatacagctgctggggaaccatgctggtcgcgcattgctcataat
attgatgacgttgagacttttttcaaacgaaccatcgagaacagagatgaaggaattgtt
ttgaaagaccttggctccaaatgggaaccaagtgatcgcagtggcaagtggttaaagttg
aaacctgattatgttagagctggatctgatctggatgttctcattataggtggatattat
ggctcaggtcgtcgtggtggacaggttgcacagtttttagtgggcctagcagaacgccca
gccccaaatacctaccctaggaggttcatttccttctgcagagtgggtactggactctct
gatgaagagcttgatgctgttgtaaataagctaaagccttattttaggaaatatgaatac
ccaaagaagggtccgcctaactattataaggttaccaataactcaaaagagagaccagat
gtctggattgatagtcccgagaaatcaatcatactttctattaccagtgacattcgtacg
attcggtctgaggtttttgctgctccatacagtttgaggtttccccgtatagataaagtg
agggacgataaaccttggcatgaatgccttgatgttgactcttttgtagagttggtgcat
tctagcaatcatacaacacaatggggggagaatcagcaagaaaataaaccaaaacgagca
aaatcatcaagggctgcaaataaaaaaagtggttcgtcagttccctctcatctgctcaag
actgatgtttctcaagttaaaggagagacaaaaatattatcagatatgatgttttacttt
gcgaatgtaccttcgacgcataccatggattcattgcacaaaatggtggctgaaaatggt
ggtactttttcaatgaatttgaacaatgcagttactcattgtattgctgccgaaagtaga
gggatcaagtttcaagctgcaaagcgtcatggtgatgtcatccattactcatggctactt
gattgttgtactcaaaagaaacttatccccttacagccgaagtattttctcgtactttcc
gagtcttcaaagaagaaattacaagaagatattgatgaattttcagatgcttattatatg
aatattgacatcaaagatttggaacagcttttgaataacatcaatagatctgaggattct
aaaaccattgattattataaaaagaagtactgtcctctggacaagtggtcacgcttcagt
ggatgctgcatgtatttctatgttccagcaaactatctgagatcagattgggaagctttc
cttgaactttcaatgagaaggatgaaacttgaagtttcctttaatggcggtaaagtcagc
aatcatatttctactgctactcatatggtggtcatgtccttgccagggttaaatgtggat
tttgatactatattgaaaagtttctcatcatcggagaggcgtcttttaaggaacaaaaag
ttacatctggtcaactgtcagtggctagaagactgtttcgagaaggaccaaatgctacaa
gaggaagattacagtttgaggcccattggttcaacagaatcaacttcatctgatgagaag
ccactggaggtggaaaccttctctagcttgaagaaagaagaagataagaagaaaaagaca
gaaattttagaagtaccaccttcagttacagatggcagaaagagaagaggtaggccaact
aaagcaaaaacaagtactagaggaaagacaggtctcaaccagcctcgaaggactcgggct
cgttctggcaacaaggccgtgaagttacatgaatatgcatctgaagaagatgaggtttct
ttagatgaaatccatgtggaagtcgatcaagaaaagcaacatgaaatgcaggaccccgtt
gttgaagatacagaaccactaaaacttgacacgtacgtgtctccttatgcacaattcaca
tcagaatatggtgacaataggggcgataatgcaactaataaagaaagtgataaactggaa
gtcatggttgacccagttcaggccatgttactagacatgatcccgagcctggaaccaaag
actaacgaaagtgtgattttggatcctccagttcccaagagtgaaaccccagccccgaca
tcagatcctaatccggggccttcaaagaagaagaaagtgagttttagggaacgggccatg
gaattgctcaaagactaa
DBGET
integrated database retrieval system
