Erigeron canadensis (horseweed): 122596083
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Entry
122596083 CDS
T07610
Name
(RefSeq) ATP-dependent DNA helicase Q-like 4A isoform X1
KO
K10901
bloom syndrome protein [EC:
5.6.2.4
]
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
122596083
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ecad03032
]
122596083
03400 DNA repair and recombination proteins [BR:
ecad03400
]
122596083
Enzymes [BR:
ecad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
122596083
DNA replication proteins [BR:
ecad03032
]
Eukaryotic type
DNA Replication Termination Factors
Other termination factors
122596083
DNA repair and recombination proteins [BR:
ecad03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecQ family DNA helicases
122596083
Bloom's syndrome complex (BTR)
122596083
FA (Fanconi anemia) pathway
122596083
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RQC
RecQ_Zn_bind
HRDC
ResIII
Iml2-TPR_39
Motif
Other DBs
NCBI-GeneID:
122596083
NCBI-ProteinID:
XP_043624533
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All DBs
Position
4:32947428..32955827
Genome browser
AA seq
1130 aa
AA seq
DB search
MSCGGDSRGVDKQMKNNWSQHVKSHDKVSSSRAEILKSNFLFSLSPQKHITKDAMAATAR
SFSCKVPNVTKAHGPQVEKAWQALSNLTLSSRNYTKPGKTKPMKDGETDTFQDVKKATQQ
CSPDTSGPTLSDQNSIDISTLQVICSTITVWTECRPLNFTCYVCNNMLLLSSIKSKFQNL
AVDQMMTPRPSMSKFPPFTPAPSNNVAACEDLSLPSELCVECDHGYKLGICPEAATHLQI
MKDMLICISNDLLDNVGELESDQIKKLREDRLHLNKQIQQLEKYLRSILIDDEGCKSNFS
SYTVTTKRNLPYATPSPFTSRVDPVRLDDQFYMNNKTDGYSKWDPSSLSCSSVGNFVDLS
TPMEREPYVRKYVEVNYTEGSDDKKWSNRDFSWTKKLEAKNKKVFGNHSFRPNQREVINA
TMSGKDVFVLMPTGGGKSLTYQLPAVICRGVTLVISPLVSLIQDQIMHLLQANIPAAYLS
ANMEWSEQQEILRELCSGHCSYKLLYVTPEKVAKSDALLRQLENLYARELLDRIVIDEAH
CVSQWGHDFRPDYQGLGILKQKFPKVPVLALTATATASVKEDVVQALGLVDCVIFRQSFN
RPNLRYSVIPKTKKCVEDIDKFIKDSHFDECGIIYCLSRNDCEKVAEKLQDFGHKAAFYH
GSMDPDKRASVQKMWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRA
GRDGQHSSCVLYYSYSDYIRVKHMLSHGSVEQTSFANSGRVLETNAENLLRMVSYCENDV
DCRRHLQLVHFGEKFDPASCRKTCDNCFSTQSLVDKDVTGIAKHLVELVKSARQQFSASH
ILEVFKGSLSQIVKKYQHDALSLHGAGKNVPKGDALRVLHHLVVEEILVEDVKKSDYYGS
VSSVLKVNEKKACDLIAGRQTIILRFPSATKISKCYKNDITPAKGLLTSSKMSPPRVDTP
AQPHPEIDPSLYAKLYSALRTLRTRLVKEAGDGVLAYHIFGNAILESISKRIPRTKDELL
EINGIGNVKLSKYGDKVLETIETTLNEYYNYDVHKHSNVSDCESTFSAKTTGAMNSSSNG
NPMDVFEFVVSPDHSRKWVSKEPDIVTAHRIHLDDDDGFHTDDDPHLEDI
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgagttgcggcggagattctagaggtgtcgacaagcaaatgaaaaataattggagtcaa
catgttaaatcacatgataaagtttcctccagtcgggctgaaatattgaaatccaacttt
cttttctctttgtcaccacaaaaacatattactaaagacgcaatggctgcaactgcaaga
tcattctcttgtaaagttccgaatgtcacaaaggctcatggtccacaagtcgaaaaggct
tggcaagcactttccaacctcacattgtcatctagaaattatacaaaacctggtaaaacc
aagccaatgaaggatggtgaaacagacacttttcaagatgttaaaaaggccactcaacaa
tgttctcctgatacatcgggacctactttgtcagatcaaaattctattgatattagtact
ctgcaggtaatttgtagtactattacggtttggactgaatgccgaccattaaattttaca
tgttatgtgtgtaacaatatgttgcttttatcatcaataaagtccaaatttcagaatctt
gctgtggatcaaatgatgacaccacgaccatcaatgtctaagtttcctcccttcacccca
gctccgagcaataatgtagcagcatgtgaggatttaagtttaccttcagaactatgtgtt
gagtgtgatcatggttataagttaggaatttgtccggaagctgctacccatttgcaaatc
atgaaggatatgctcatttgcatatcaaacgatcttcttgataatgtcggtgaattggaa
tcagatcaaataaaaaagcttcgagaagataggctgcatttgaataagcaaatccaacag
cttgagaaatatctccgttctatattgatagatgatgaaggatgcaaatcaaacttttct
tcatatacagttacgacaaagagaaatttaccgtatgcaactccttcaccatttacatcg
agggttgatcctgtgagacttgatgatcagttctacatgaataacaagacagatggctat
agtaaatgggatccatcatcgttatcatgttcttcggtgggtaacttcgttgatctttca
acacctatggagagggagccatatgttcgcaagtatgttgaagtcaattatacagaaggt
tcggatgacaagaaatggagcaacagagatttttcatggactaaaaagctagaggctaaa
aataaaaaagtgtttggaaatcattccttccgtcccaaccaaagagaggtgattaatgcg
acaatgagtggaaaagatgtttttgttttgatgccaacaggaggtggaaagagccttaca
tatcagctaccggctgttatttgtcgaggtgtgacattggtaatctcaccccttgtttct
ctgatccaagatcagataatgcatctattacaggcaaatatacctgctgcttacttaagt
gcgaatatggagtggtctgagcaacaagagattctcagagagctttgttcagggcattgt
agttacaaactcttatatgtcacccctgaaaaagtagcaaaaagtgatgctctcttgcgt
cagttagaaaacttgtatgcacgagaattgcttgatagaattgtgattgacgaagcacat
tgtgtaagccaatgggggcatgatttcagaccagattaccagggtcttggtattttgaag
caaaagttcccaaaggttcctgtattagcattaactgctactgcaacagccagtgttaag
gaagatgttgtgcaggctcttggtcttgttgactgcgttatatttcggcaaagtttcaac
cgcccaaatctaaggtattcagttatccctaagacgaaaaaatgcgtggaggatattgac
aagttcatcaaggacagtcatttcgatgaatgtggaatcatctattgtctatctaggaat
gactgtgaaaaagtcgctgaaaaattgcaggattttgggcacaaagctgcattttaccat
ggtagtatggaccctgataaacgtgcatcagttcaaaagatgtggagtaaagatgagatt
aatataatatgtgcaactgttgcttttggaatgggtatcaataaaccggacgtgcggttt
gtcattcaccattctctccctaaatccatcgagggttaccaccaggaatgtggccgtgca
ggtagagatgggcagcattcttcttgtgtattgtattatagctatagtgattatattcga
gtcaagcatatgcttagtcatggatctgtggagcaaacctcttttgcaaattctggaagg
gtactggaaactaatgctgagaaccttttgcgcatggtcagttattgtgagaatgatgtt
gactgtcgacgtcatctacaacttgttcattttggagaaaagtttgatcccgcgagctgc
aggaaaacatgtgacaattgtttcagcacccagagccttgtagataaggatgttaccggg
atagcaaagcacttggttgaattagtgaaatcagccagacaacagttctcagcatctcat
atattggaagtcttcaaaggttctctgagccaaattgtcaaaaagtaccaacatgatgcc
ttaagcttgcatggagctggaaaaaatgtaccgaagggagatgcattacgtgtgctacac
catcttgttgttgaggagattcttgtggaggatgtaaaaaaaagtgattactatggaagc
gtatcatcagttctaaaagtaaatgaaaagaaagcctgcgatttgattgcgggtcggcag
accataatcttaaggtttccttctgccactaaaatatctaaatgttataaaaacgatatc
actccagctaaaggtttgttaacatcatcaaagatgagtcctccccgagtagatactcct
gctcaacctcatccagaaatagatccgagtctctatgctaagttatactctgctttgcga
actcttcgaacacgtcttgttaaggaagcaggtgacggtgtcttggcataccacatcttt
ggaaatgctatactggaaagtataagcaaaaggatccccagaactaaagatgagctactt
gagattaatggcattggcaacgtgaaactaagcaagtatggtgataaagtattggaaacc
attgagactaccctcaatgaatactacaattatgatgtacacaaacacagcaatgtaagt
gattgtgaaagtacattttcagcaaaaacgacaggtgccatgaacagtagttcaaatggg
aacccaatggacgtatttgagtttgttgtaagccctgatcattcaaggaagtgggtgtca
aaagaacctgacatagtaactgctcacaggattcatcttgacgatgatgatggttttcac
actgatgatgatccccatcttgaggacatttaa
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