Erigeron canadensis (horseweed): 122596645
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Entry
122596645 CDS
T07610
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122596645
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecad03019
]
122596645
03041 Spliceosome [BR:
ecad03041
]
122596645
03009 Ribosome biogenesis [BR:
ecad03009
]
122596645
03016 Transfer RNA biogenesis [BR:
ecad03016
]
122596645
Enzymes [BR:
ecad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122596645
Messenger RNA biogenesis [BR:
ecad03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
122596645
Spliceosome [BR:
ecad03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
122596645
Complex C
U4/U6.U5 tri-SnRNP related factors
122596645
Ribosome biogenesis [BR:
ecad03009
]
Eukaryotic type
Pre-60S particles
Helicases
122596645
Transfer RNA biogenesis [BR:
ecad03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
122596645
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
ResIII
Helicase_C
ATPase_2
Zot
Motif
Other DBs
NCBI-GeneID:
122596645
NCBI-ProteinID:
XP_043625192
LinkDB
All DBs
Position
4:complement(3258677..3266750)
Genome browser
AA seq
996 aa
AA seq
DB search
MEINNNKRKSAEEGPSNATPPPHKHQHTDAADGVTACLHDVSYPQNYVVNRHVAASNEEE
GGEELKKKPAKEFPFTLDPFQSEAIHCLNAGESVMVSAHTSAGKTVVASYAIAMSLKNKQ
RVIYTSPIKALSNQKYREFKEEFSDVGLMTGDVTIDPNASCLVMTTEIWRSMQYKGSELT
REVAWIIFDEVHYMRDRERGVVWEESIVMAPKNARFVFLSATVPNAKEFADWVAKVHQQP
CHIVYTDYRPTPLQHYLFPTGGDGLYLVVDEKGKFREDSFQKALNALVPANEKKDSGKWQ
KGLVNGRAGEDSDIFKMVKMIIQRQYDPVIIFSFSKRECEFLAMQMAKMDLNEDDEKVNT
ETIFWSAMDMLSDDDKKLPQVSNMLPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLF
ATETFSIGLNMPAKTVVFSNVRKFDGDKFRWLSSGEYIQMSGRAGRRGIDDRGVCILMVD
EKLEPSTAKMMVKGSADCLNSAFHLSYNMLLNQLRSEDGDPENLLRNSFYQFQADRAIPD
LEKQMKALQEEKDSIHIEEEKSLENYYSLLQQYRSFKKDVRDIIFSPKYCLPFLQPGRLV
CVRCVSNDESTLAFSIEDHVTWGVIVNFQRVKGLSEDDINKSPEDATYTVDILTRCAVSR
DELSKKTIKIVPLKEPGEPVVVSVPVSQIDSLSSVRLIIAKDLLPLENRENTLKKVSEVL
SRFSKQGIPLLDPEEDMKVQSGSYRKAVRKIEALENLFEKHEVAKSPLIEQKLKVLHKKK
EITAQIKTIKSSMRSTSALAFKDELKARKRVLRRLGFVTREDVVELKGKVACEISSADEL
VLTELMFNGVFKDIKIEEMVSLLSCFVWQEKLQDAQKPREELDMLYTQLQDTARRIATVQ
LECKVEIDVESFVSSFRPDIMEAVYSWAKGSKFYEIMEITPVFEGSLIRGIRRMEEILQQ
LILAAKSVGEVELEAKFEEAVSKIKRDIVFAASLYL
NT seq
2991 nt
NT seq
+upstream
nt +downstream
nt
atggaaataaacaataataaaagaaaatcagcagaagaaggcccatcaaatgctacccct
ccaccacacaaacatcaacacacagatgctgctgacggcgtaactgcttgtcttcatgac
gtgtcatatccccagaattacgtggtcaatcgccacgtggcagccagtaatgaagaagaa
ggaggagaagaattgaagaagaagccagctaaggaatttcctttcactttggaccctttt
cagtctgaagctatccattgtttaaatgctggtgaatctgttatggtatcagcccatacg
tcagctgggaaaactgtcgtggcatcgtatgctattgcaatgtcgctgaagaataagcaa
agagtgatatacacttctcctataaaggcactgagtaaccaaaagtatagagagtttaaa
gaagagttctcagatgttggtttgatgaccggggatgttactattgatcccaatgcttct
tgcttggtaatgaccacagaaatctggcgtagtatgcagtacaaaggatcagagctcaca
agggaggtggcatggatcatatttgatgaggtacattatatgcgtgatagagaaagaggt
gtggtttgggaagagagtattgttatggccccgaaaaatgctcggtttgtgttcctttca
gctactgttccaaatgctaaggagtttgctgactgggttgcaaaggttcatcagcaacct
tgtcatattgtttatacggattatcggccaacgcctcttcagcattacctttttcctact
ggtggcgatggtttatacttggtggtcgatgaaaagggaaaatttcgtgaggatagtttt
caaaaagctttaaacgcccttgttcccgccaacgagaagaaagatagtggcaaatggcag
aaggggttggtgaatggtagagctggtgaagatagtgacatatttaagatggtcaagatg
attattcaacgccaatatgaccctgtcataatctttagcttcagtaaaagggaatgtgaa
ttccttgcaatgcagatggcaaagatggatctaaatgaggatgacgagaaagtgaacact
gagactatcttttggagtgccatggacatgttatcggatgatgataagaagctaccccag
gtgtcaaatatgctccccctcttgaagcggggaataggtgtgcatcattctggtttgctg
cccatattgaaggaagtcatcgaaatattattccaagaaggtctaatcaagtgcttgttt
gccacagagacattcagcataggtcttaatatgcctgcaaaaacagttgttttttcaaat
gttcgcaagtttgacggtgataagtttagatggttatcaagtggggagtatatacagatg
agtgggcgtgcggggcgtcgaggaatagacgatcgtggtgtgtgtattcttatggttgat
gagaagttggaaccatccactgctaagatgatggtcaaaggaagtgctgattgtttgaac
agtgctttccatttaagctataacatgcttttgaatcaactacgatctgaagatggagat
ccagaaaatttgcttcggaactcattctatcaattccaagcagaccgagccattcctgac
cttgagaaacaaatgaaggctcttcaggaggaaaaggattcaattcatattgaagaagag
aagagtttagaaaattactactctttgttgcagcaatatagaagctttaagaaggatgtc
cgggacatcattttttctcccaagtactgcttgccatttttgcagccaggcaggcttgta
tgcgttcgttgtgtaagtaatgatgaaagcactctagccttttcaattgaggatcatgta
acatggggtgttatagtcaactttcaaagggtaaagggtctttcagaagatgatataaat
aaaagtccagaagatgcaacctacactgtggatatacttacaagatgtgcagtatctaga
gacgaactttcaaagaaaacaatcaagattgttccgctgaaggagcccggggaacctgta
gttgtttctgttcctgtttcgcagatagatagcttgagtagtgtccgtctcataattgcg
aaggatcttttgccattggaaaatcgagaaaatactttgaaaaaggtgtctgaagttctc
tcaagattttctaaacaagggatacccctcttagacccagaagaagacatgaaggtccaa
agtgggtcttacaggaaggcagtccgcaagattgaggctctagagaacttgtttgagaag
catgaagttgcaaagtctccacttattgagcagaagcttaaagtattgcacaagaagaag
gaaattactgcccaaataaaaacgatcaagagttcaatgcggtctacctctgctctggcc
tttaaagatgaactcaaagcaaggaaaagagttttaaggagactaggatttgtgactaga
gaggatgttgtggaattgaaggggaaagttgcctgtgaaattagcagtgccgatgaattg
gtgctaacagaacttatgtttaatggtgtattcaaagacattaagatagaagaaatggta
tctcttttatcttgttttgtgtggcaagagaagcttcaggatgctcaaaagcccagggaa
gagctggacatgctttacacacaattgcaagatactgcacgaagaattgctacagttcag
ctagagtgcaaggtggaaattgatgtagaaagttttgtgagttcattcaggccggatatt
atggaggccgtttattcatgggcaaaagggtccaagttttatgagatcatggaaatcaca
ccagtgtttgaaggcagtttgatcagaggtatcaggagaatggaagaaattctccagcag
ttaatcttagccgcaaaatcagttggggaagttgaacttgaagccaagtttgaagaagcc
gtttccaagatcaagagggatattgtgtttgcagcctctctctacttgtag
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