Equus caballus (horse): 100053011
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Entry
100053011 CDS
T01058
Symbol
TOPBP1
Name
(RefSeq) DNA topoisomerase 2-binding protein 1 isoform X1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
ecb
Equus caballus (horse)
Pathway
ecb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ecb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
100053011 (TOPBP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ecb03032
]
100053011 (TOPBP1)
03400 DNA repair and recombination proteins [BR:
ecb03400
]
100053011 (TOPBP1)
DNA replication proteins [BR:
ecb03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
100053011 (TOPBP1)
DNA repair and recombination proteins [BR:
ecb03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
100053011 (TOPBP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
ECT2_BRCT0
Motif
Other DBs
NCBI-GeneID:
100053011
NCBI-ProteinID:
XP_023476712
Ensembl:
ENSECAG00000015739
VGNC:
50520
LinkDB
All DBs
Position
16:complement(70798668..70858446)
Genome browser
AA seq
1515 aa
AA seq
DB search
MSRNDKEPFLVKFLKSSDNSECFFKALESIKEFQSEEYLQIITEEEALKIRENDRSLYIC
DPFSGIVFDHLRKLGCRIVGPQVVIFCMQHQRCVPRAEHPVYNMVMSDVTVSCTSLEKEK
REEVHKYVQMMGGRVYRDLNVSVTHLIAGEVGSKKYLVAANLKKPILLPSWVKTLWEKSQ
EKKIARYTDINVEDFKCPVFLGCIICVTGLCGLERKAVQQLTIKHGGQYMGQLKMNECTH
LIVQEPKGQKYECAKRWNVHCVTTKWFFDSVEKGFCQDESIYRTEPRPETKAMPDTSTPT
GQITTGDGRTLSDVSHISNINASCINESICNSVLNSKVEPTLENLENLDISAFQAPEDLL
DGCRIYLCGFSGRKLDKLRRLINSGGGVRFNQLNEDVTHVIVGDYDDELKQFWDKSAHRP
HVVGAKWLLECFNKGYMLPEEPYIHANYQPVEIPVSDPPESKTALLKKNSSFSKKDFAPV
EKHEQADEDLLSQYVINNPTIVEAAKSQAGPFNDSTHISLQEENQSSVSHCLPDTSTVTE
EGLFSQKSFLVLGFSSENEANIANIIRENAGKTVSLQSRIVADYAVVPLLGCEVEATVGE
VVTNAWLVTCIDYQTLIDPKSNPLFMPVPVMAGVTPLVDCVISFSQCVGAEKDSLTFLAN
HLGASVQEFFVRKSNAKKGMLASTHLVLKEPGGSKYEAAKKWNLPAVTIAWLLETARMGK
RANESHFLIENSPKEEQSLETEIVNGVNLNPDTPEQPATHVDTHRKTAVTPLDMNRFQSK
AFHAVISQHTGQHSVSPAVGQPLQKEPSLHLDTPSKFLSKDKLFKPSFDVKDALAALETP
RGPSQQKRKLSTPLSEVIVRNLKLALANSSRNAVALSASPQLKDAQAEKELEEALKPLHK
VVVCVSKKLSKKQSELNGIAASLGADYRWSFDETVTHFIYQGRPNDTNREYKSVKERGVH
IVSEHWLLECAQEYKHLPESLYPHTYNPKMSLDISAVQDDRLCNSRLLSAGSTIKDDEPD
HLPIEENDIDNMTTSDKESATANGNGRNDSKGALTQTLEMRENFQKQLQEIMSATSIVKP
QVQRTSLSRSGCNSASSTPDSTRSARSGRSRVLEALRQSRQTVPDVNTEPSQNEQIIWDD
PTAREERARLASNLQWPSCPTQYSEPQVDIKKVEDSPFQEPLHDSEIAEQALCGPGNICV
PEAPKHSTCDELETPIKDSHLIPTPQAPSIAFPLANPPVAPHPKAQIITIEETHEDLKKQ
YIFQLSSLNPQERIDYCHLIEKLGGLVIEKQCFDPNCTHIVVGHPLRNEKYLASVAAGKW
VLHRSYLEACRTAGHFMPEEDYEWGSSCILDVLTGINVQQRRLALAAMRWRRKIQQRQES
GIIEGAFSGWKVILHVDPSREAGFKRLLQSGGAKVLSGHSVPLFKEATHLFSDLNKLKPD
DSGVNIAEAAAHNVYCLKTEYIADYLMQESPPQVENYCLPEALSFLQNNKEPGPGLSQKR
KAPAEKNKIKRPRVH
NT seq
4548 nt
NT seq
+upstream
nt +downstream
nt
atgtccaggaatgacaaagaaccgtttttggtgaagtttttaaagtcttcagacaattct
gaatgtttttttaaagctcttgagtcaataaaagagttccaatcagaagaatatcttcag
attattacagaagaagaggcattgaagataagggagaatgatcgatcactttatatctgt
gacccttttagtggcattgtctttgatcacctcagaaagcttggctgcagaattgttggt
cctcaagtagtcatattttgtatgcagcaccagcgatgtgttccaagagccgaacatcca
gtttataatatggttatgtctgatgtaaccgtatcttgtacaagcctggaaaaagagaaa
agagaagaagttcataaatatgtacaaatgatgggcggacgcgtatacagagaccttaat
gtatcagtcactcaccttattgcaggagaagttggcagcaagaaatatttagttgctgcg
aacctgaagaaacctattttgcttccttcctgggtaaaaacactttgggagaagtcccag
gagaagaaaatagctagatacactgatataaacgtggaagacttcaagtgtcctgtcttt
cttggttgtataatctgtgtgactggcttgtgtggcttagagaggaaggcagttcagcaa
ctcacgattaagcatggaggtcaatacatggggcagttgaaaatgaatgaatgtacacac
ctcattgtgcaagaaccgaaaggtcaaaaatatgaatgtgccaagagatggaatgtacac
tgtgtgaccacgaaatggttttttgacagtgttgagaaaggtttttgtcaggatgaatcc
atatacaggacagaacctagaccagaaacaaaggctatgcctgatacttcaactcctact
ggccagatcactacaggtgacggtcgtactctttcagatgtcagccatatttccaacatc
aatgcaagttgcataaatgaatcgatatgtaattcagttcttaatagtaaagtggagcct
acacttgaaaatctagaaaatctggacatcagtgcatttcaggcacctgaagatttatta
gatggttgtcggatatatctctgcggttttagtggcagaaagctagataaactgagaagg
cttattaacagtggaggcggagttcgttttaatcagctcaatgaagatgtaactcatgtt
attgtgggagattatgacgatgaattgaagcagttttgggataaatcagcccacaggcct
catgtagtgggagcaaaatggttgctagagtgttttaataaaggttatatgcttcctgaa
gagccatatatccacgccaactaccagccagtggaaattccagtgtcagatccacctgaa
agtaaaacagcccttttaaaaaagaacagcagcttctctaagaaagactttgctcctgtt
gaaaagcatgaacaagctgatgaagatctgctctctcaatatgtaattaataacccaaca
atagttgaagctgcaaagtctcaagctgggccctttaatgattctactcatatatctctt
caagaagaaaaccagtcttctgtcagtcattgcctccctgacacttctacagttactgaa
gaaggtttattcagccaaaagagtttccttgttctgggttttagtagtgaaaatgaagct
aatattgcaaatatcatcagagaaaatgctggaaaaactgtgtcccttcagagcagaatt
gttgctgattacgctgtggttcctctgctggggtgtgaagtggaagcaactgtgggagaa
gttgttacaaatgcgtggctggtaacttgtatagactatcagactttaattgatccaaag
tcaaatcctctcttcatgccagtcccagtaatggcaggagtgactcctttagtggattgt
gttatttcgttcagccagtgtgtgggagcagaaaaagattcattgacattcttagcaaat
caccttggagcaagtgttcaagaattctttgttcgcaaatccaatgcaaagaaaggtatg
cttgccagtacacatcttgtattgaaagaaccaggtggttctaaatacgaagctgccaag
aagtggaatttaccagcagtcactatagcttggctcttggagactgctagaatgggaaag
agagcaaatgaaagccattttctgattgaaaattcacctaaagaagaacaaagtttggaa
actgaaatagtaaatggggtgaatctaaatccagatactccagagcagcctgccacacac
gtggacacgcacaggaaaacagccgttacccccttagatatgaaccgcttccagagtaag
gcgttccatgctgtgatctcccagcacactgggcagcactcagtttccccagcagtgggc
cagccgctccagaaggagccctctttacacctggacacgccatcaaaatttctgtccaag
gacaaactcttcaagccttcttttgatgtcaaggatgcacttgcagccttggaaactcca
agaggtcccagccaacagaagaggaagctgagcacaccactctcagaagtcattgtcaga
aacttgaaacttgctttggcaaatagctctcgaaatgctgttgctctttctgccagccct
caactgaaggatgcccaagcagagaaggaactggaagaagccttgaagccacttcacaag
gtagtggtgtgtgttagtaaaaaactcagtaagaagcagagtgaactcaatgggatcgca
gcctctctaggagcagattacaggtggagtttcgatgaaacagtgactcatttcatctat
caggggcgaccaaatgacactaatcgagagtataaatctgtaaaagaaagaggagtacac
attgtttcagagcactggcttttagaatgtgcccaggagtataaacatcttcctgaatct
ctttatccacatacttataatcccaaaatgagcttggatatcagtgcagtgcaagatgac
agactctgtaacagtcggctactctcagctggttctacaataaaggatgatgagccagat
catttgcctatagaagaaaatgatatagacaatatgaccaccagtgataaagaatcagca
acagcaaatggaaatggaaggaatgactctaaaggagctctgacacagaccttggagatg
agagagaacttccagaagcagctgcaggagataatgtctgcaacatcaatagtgaaaccg
caagtgcagaggacttctctttccagaagtggttgtaacagcgcttcttcaacccctgac
agcactcgctctgcccgcagtggacgaagtagagtcctggaggccctgaggcagtctcgt
cagacagtacctgatgtcaacacagagccctcccaaaatgaacagatcatttgggatgac
cctacagccagggaggagagagcaaggcttgccagcaatctgcagtggcccagttgtccc
acacaatactctgagcctcaggttgacattaaaaaagtggaggattctcctttccaggag
cctttacatgactcagaaattgctgaacaggctctctgtggtcctggaaacatatgtgtg
cctgaagccccaaagcactcgacctgtgatgaactggaaactccaataaaagacagccac
ctgatccctacgcctcaagcccccagtattgccttccccctggccaacccgcctgtggcc
ccacaccctaaagcacagattataacgatagaagagacccatgaagacttaaaaaaacag
tacatatttcagttgtcatctctgaatcctcaagaacgtattgattactgtcatctgatt
gaaaaactaggtggattagtgatagagaagcagtgctttgatcccaactgcacacacatt
gttgtgggacatccacttcgaaacgagaagtacttagcctcagtggcagctggcaagtgg
gtgcttcatcgctcctaccttgaagcatgcaggacagctgggcacttcatgccggaagaa
gactatgaatggggaagtagttgcatacttgacgttttgactggaatcaatgtacagcag
cgaagactagcacttgcagcaatgagatggaggagaaaaatccagcaaagacaagaatcg
ggcattattgagggggcatttagtgggtggaaggtaatcttacatgttgatccatcccga
gaagcaggattcaaacgccttcttcagtcaggaggagcaaaggtgctatctggtcattct
gtacctttatttaaagaagccacacatctcttctctgacttaaataaactcaaaccagat
gactcaggagttaatatagcggaagctgctgcccataatgtgtactgcttgaaaacggaa
tatattgctgattatcttatgcaggaatcccctcctcaagtagaaaattactgtctacca
gaagctctttcatttcttcagaataataaggaacctgggcctggattatcacaaaagagg
aaagctcctgcagagaaaaataaaatcaaacgacctagagtacactga
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integrated database retrieval system
