Equus caballus (horse): 100058559
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Entry
100058559 CDS
T01058
Symbol
UPF3B
Name
(RefSeq) regulator of nonsense transcripts 3B isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
ecb
Equus caballus (horse)
Pathway
ecb03013
Nucleocytoplasmic transport
ecb03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ecb00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100058559 (UPF3B)
03015 mRNA surveillance pathway
100058559 (UPF3B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecb03019
]
100058559 (UPF3B)
Messenger RNA biogenesis [BR:
ecb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
100058559 (UPF3B)
mRNA cycle factors
P-body specific factors
100058559 (UPF3B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
100058559
NCBI-ProteinID:
XP_014584626
Ensembl:
ENSECAG00000016947
VGNC:
24807
LinkDB
All DBs
Position
X:complement(98971891..98987471)
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AA seq
482 aa
AA seq
DB search
MKEEKEHRPKEKRVTLLTPPGATGSGGGASGDSSKGEDKQDRNKEKKEALSKVVIRRLPP
TLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL
DNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLESYAADNEKMTSTPET
LLEEIEAKNRELIAKKTTPLLSFLKNKQRMREEKREERRRREIERKRQREEERRKWKEEE
KRKRKDIEKLKKIDRVPERDKLKDEPKIKVHRFLLQAVNQKNLLKKPEKGDEKELDKREK
AKKLDKENLNDERASGQSCTLPKRSDGELKEEKPRRPEDESGRDYRERDRDYERDQERIL
RERERLKRQEEERRRQKERYEKEKAFKRKEEEVKKEKEALRDKGKKTESTESVGSSEKTE
KKEEVVKRDRIRNKDRPAMQLYQPGARSRNRLCPPDDSTKSGDSAIEKKQESGISHRKEG
EE
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaggagaaggagcacaggccgaaggagaagcgagtaaccctcttgactcccccg
ggggccacaggcagcggcggtggggcttcgggggacagcagcaaaggggaagataaacag
gatcgaaacaaggagaagaaagaggcgctgagcaaggtggtaattcggagattacctcct
actttgaccaaggagcagcttcaggaacatcttcagcctatgcccgagcatgattatttt
gagtttttttctaatgatactagtctgtatcctcatatgtatgccagagcatacatcaac
tttaaaaaccaagaggacattattttgttcagggatcgctttgatggttatgtattcctt
gacaataaaggtcaggaatatcctgctatagtagaatttgcaccttttcaaaaagctgca
aaaaagaagactaagaaaagagatactaaagttgggactatcgatgatgatccagaatat
agaaaatttttggaaagttatgctgcagataatgagaaaatgacatctactccagagaca
ctgctagaggaaatagaagcaaaaaatagagaattaatagctaaaaagacaaccccactt
ttgagcttcctgaaaaacaagcagagaatgagagaagaaaaaagagaagaaagaaggagg
cgagaaatagaaagaaaaagacaaagagaagaagagaggaggaaatggaaagaagaagag
aaacgaaaaaggaaagatatagaaaagctaaagaagatagacagagttccagaaagggac
aaattaaaggatgaaccaaagattaaggtacacaggtttctgttacaagctgtgaatcag
aaaaatctgctcaagaagccagaaaaaggagatgaaaaagaattggacaaaagagaaaaa
gccaagaaactggacaaagagaatctgaacgatgaaagagccagtgggcaaagttgcaca
ttgcccaagcgttctgatggtgaacttaaagaggaaaagcctaggagacctgaagatgag
agtggcagagactacagggagagggaccgggattacgaacgtgatcaagagcgcatactt
cgggagagagagagactcaagcggcaagaagaagagcgccgcaggcagaaggagcgctat
gagaaggagaaggcttttaaaaggaaggaggaggaagtgaaaaaagagaaagaagcactt
cgggacaaagggaagaagactgaaagtacagaatcagtaggcagctcagaaaaaactgaa
aagaaagaggaagtggttaagagagatcgcataagaaacaaggatcgcccagcaatgcag
ctttaccaaccaggagctcgaagccgaaatcgactctgtccccctgatgacagcaccaag
tctggagattcagcaatagaaaaaaagcaggaaagtggtattagccatagaaaagaagga
gaggagtga
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