Equus caballus (horse): 100070506
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Entry
100070506 CDS
T01058
Symbol
SF3B1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
ecb
Equus caballus (horse)
Pathway
ecb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ecb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100070506 (SF3B1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ecb03041
]
100070506 (SF3B1)
03036 Chromosome and associated proteins [BR:
ecb03036
]
100070506 (SF3B1)
Spliceosome [BR:
ecb03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
100070506 (SF3B1)
Complex B
100070506 (SF3B1)
Complex C
U2 SnRNP specific factors
100070506 (SF3B1)
Chromosome and associated proteins [BR:
ecb03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
100070506 (SF3B1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
HEAT_EZ
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
TALPID3
Motif
Other DBs
NCBI-GeneID:
100070506
NCBI-ProteinID:
XP_001500218
Ensembl:
ENSECAG00000021657
VGNC:
22888
UniProt:
F6WZ50
LinkDB
All DBs
Position
18:complement(72792218..72853398)
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AA seq
1337 aa
AA seq
DB search
MRREQPQLFFFVAAATSGSSWERQFRLCVRVDKMAKIAKTHEDIEAQIREIQGKKAALDE
AQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAATELEDDDDDYSSSTSLLGQKKPGYHAP
VALLNDIPQSTEQYDPFAEHRPPKIADREDEYKKHRRTMIISPERLDPFADGGKTPDPKM
NARTYMDVMREQHLTKEEREIRQQLAEKAKAGELKVVNGGAASQPPSKRKRRWDQTADQT
PGATPKKLSSWDQAETPGHTPSLRWDETPGRAKGSETPGATPGSKIWDPTPSHTPAGAAT
PGRGDTPGHATPGHGGATSSARKNRWDETPKTERDTPGHGSGWAETPRTDRGGDSIGETP
TPGASKRKSRWDETPASQMGGSTPVLTPGKTPIGTPAMNMATPTPGHIMSMTPEQLQAWR
WEREIDERNRPLSDEELDAMFPEGYKVLPPPAGYVPIRTPARKLTATPTPLGGMTGFHMQ
TEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLVDVDESTLSPEEQKERKIMKLLLKIKNG
TPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLV
RPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNT
TARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLV
EIIEHGLVDEQQKVRTISALAIAALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFL
KAIGYLIPLMDAEYANYYTREVMLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIK
TEILPPFFKHFWQHRMALDRRNYRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKM
VMETIEKIMGNLGAADIDHKLEEQLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKP
YLPQICGTVLWRLNNKSAKVRQQAADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYP
EVLGSILGALKAIVNVIGMHKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGA
EYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQ
NRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIY
AVTPLLEDALMDRDLVHRQTASAVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVI
QAVMGALEGLRVAIGPCRMLQYCLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPRI
YNDDKNTYIRYELDYIL
NT seq
4014 nt
NT seq
+upstream
nt +downstream
nt
atgcgcagagagcagccccagctgtttttcttcgtggcagcggcgacgagcggaagttct
tgggagcgccagttccgtctgtgtgttcgagtggacaaaatggcgaagatcgccaagact
cacgaagatattgaagcacagattcgagaaattcaaggcaagaaggcagcccttgatgaa
gctcaaggagtgggccttgattctacaggttattatgaccaggaaatttatggtggaagt
gacagcagatttgctggatatgtgacatcaattgctgctactgaacttgaagacgatgac
gatgactactcatcatctacaagtttgcttggtcagaagaagccgggatatcatgcccct
gtggcattgctcaatgatataccacagtcaacagaacagtatgatccatttgccgagcac
cgacctccaaagattgcagaccgtgaagatgaatacaaaaagcacagacggaccatgata
atttccccagagcgtcttgatccttttgcagatggagggaagacccctgatcctaaaatg
aatgctaggacatacatggatgtgatgcgagaacagcatttgactaaagaagagagagaa
attaggcaacaactagcagaaaaagctaaagctggggaactaaaagtcgtcaatggagga
gcagcgtcccagcctccctcaaaacgaaaacggcgttgggatcaaacagctgatcagact
cctggtgccactcccaaaaaactatcaagttgggatcaagcagagacccccggacatacc
ccttccttaagatgggatgagacaccaggtcgtgcaaagggaagtgagactcctggagca
accccaggctcaaaaatatgggatcctacacctagtcacacaccagctggagctgctact
cctggacgaggtgatacaccaggccacgcgacgccaggccatggaggcgcaacttccagt
gctcgtaaaaacagatgggatgagacccccaaaacagaaagagatactcctggacatgga
agtggatgggctgagactcctcgaacagatcgaggtggagattcaattggtgaaacacca
actcctggagccagtaaaagaaaatcacgttgggatgaaacaccagctagtcagatgggt
ggaagcactcctgttctgaccccgggaaaaacaccaattggcacaccagccatgaacatg
gctacccctactccaggccacattatgagtatgactcctgaacagcttcaggcttggcgg
tgggagagagaaattgatgagagaaatcgcccactttctgatgaagaattagatgctatg
ttcccagaagggtataaggtacttccccctccagctggttatgttcctattcgaactcca
gctcgaaagctgacagcaactccaacacctttgggtggtatgactggtttccatatgcaa
actgaagatagaactatgaaaagtgttaatgaccagccatctggaaatcttccatttttg
aagcctgatgatattcagtactttgataaacttttggttgatgttgatgaatcaacactt
agtccagaagagcaaaaagagagaaaaataatgaagttgcttttaaaaattaagaatgga
acacctccaatgagaaaggctgcattgcgtcagattactgataaagctcgtgaatttgga
gctggtcctttgtttaatcagattcttcctctactgatgtctcctacacttgaggatcaa
gagcgtcatttacttgtgaaagttattgatagaatattatacaaacttgatgacttagtt
cgaccgtatgtgcacaagatccttgtcgtcattgaaccgttgttgattgatgaagattac
tatgctagagtggaaggccgagagattatttctaatttggcaaaggctgctggtctggct
actatgatctccaccatgagacctgatatagataacatggacgaatatgtccgtaacaca
acagctagagcttttgctgttgtagcctctgccctgggcattccttcattattgcccttc
ttaaaagctgtgtgcaaaagcaagaagtcctggcaagcaagacacactggtattaagatt
gtacagcagatagctattcttatgggctgtgccatcttgccacatctcagaagtttagtt
gaaatcattgaacacggtctcgtggatgagcagcagaaggttcggaccattagtgctttg
gccattgctgccttggctgaagcagcaactccttatggtatcgaatcttttgattctgtg
ttaaaacctctgtggaagggtatccgccaacacagaggaaagggtttggctgctttctta
aaggctattgggtatcttattcctctcatggatgcagaatatgctaactactatactaga
gaagtgatgttaatccttattcgagaattccagtctcctgatgaagaaatgaagaaaatt
gtgctgaaggtggtaaagcagtgttgtggaacagatggtgtagaagcaaactacattaaa
acagagatccttcctcctttttttaaacatttctggcaacatagaatggctttggataga
agaaactaccgacagttagttgatactactgtggagttggcaaacaaagtaggtgcagca
gaaattatatccaggattgtggatgatttgaaagatgaagctgaacagtacagaaagatg
gtgatggagacaattgagaaaatcatgggcaacttgggagcagcagatattgatcataaa
cttgaagaacaactgattgatggtattctttatgcttttcaagaacagactacagaggac
tcagtaatgttgaacggctttggcacagtggtcaatgctcttggcaaacgagtcaaacct
tacttgcctcagatctgtggtacagttttgtggcgattaaataacaaatcagccaaagtt
aggcagcaggcagctgacttgatctctcgaactgctgttgtcatgaagacttgtcaagag
gaaaaattgatggggcacttgggtgttgttttgtatgagtatttgggtgaagagtaccct
gaagtgttgggcagcattcttggagcactgaaggccattgtaaacgtaataggtatgcat
aagatgacgcccccaattaaggatctgctgcctagactcactcccatcttaaagaacagg
catgaaaaagtgcaagagaattgtattgatcttgttggacgtattgctgacaggggagct
gaatatgtctctgcaagagaatggatgaggatttgctttgagcttttagagctcttaaag
gctcacaaaaaagctattcgtagagccacagtcaacacttttggttatattgcaaaggcc
atcggccctcatgatgtattggctacacttctaaacaacctcaaagttcaggaaaggcag
aacagagtttgtaccactgtagcaatagctattgtcgccgaaacatgttcacccttcaca
gtactacctgccttaatgaatgaatacagagttcctgaactgaatgtccaaaatggagtg
ttgaaatctctttcctttttgtttgaatatattggtgaaatgggaaaggactacatttat
gctgtaacacccttgcttgaagatgctttaatggatagggaccttgtacacagacagacg
gctagtgcggtggtgcaacacatgtcacttggggtttatggatttggttgtgaagattcg
ctgaatcacttgttgaactacgtatggcccaatgtgtttgagacatctccccatgtaatt
caggcagttatgggagctctggagggcctgagagttgctattggaccatgtagaatgttg
cagtactgtttacagggtttgtttcacccagcccggaaagtcagagatgtgtattggaaa
atttacaactccatctacattggttcacaggatgctctcatagcacattacccaagaatc
tacaatgatgataagaacacctatattcgttacgaacttgactatatcttataa
DBGET
integrated database retrieval system
