Echinicola soli: FKX85_03815
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Entry
FKX85_03815 CDS
T06084
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
echi
Echinicola soli
Pathway
echi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
echi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FKX85_03815 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
echi03400
]
FKX85_03815 (mfd)
Enzymes [BR:
echi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FKX85_03815 (mfd)
DNA repair and recombination proteins [BR:
echi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FKX85_03815 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
RecG_dom3_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QDH78212
UniProt:
A0A514CEF3
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Position
complement(915319..918669)
Genome browser
AA seq
1116 aa
AA seq
DB search
MEKKAFLTLYEQDSYIKTVAKAIESSAGSNFAFKGISGSMDMVLLAAFINLRRSSHLIIA
HDKEEAAYLASDLSSLLDKVEPQVFPSSYKRPYQHEEVDNANVLMRAEILNKVLTKDNDM
EIIVSYPEALYEKVINKKSLQENTFVAKVGEKVDIGFIAELLSTYDFDKTDFVYEPGQFA
IRGGIIDVFSFANESPYRIELFGKEIESIRTFDTESQLSKEELDHISIIPNVQTKLMQEV
RQSFTDFMPKETCVWIKDLQFTMDMLDNAFEKASQQFEKIVDQTGSKSLVLKPENLFDDG
AAFLQSLDLLTKIEFGNQFHLPPSKTFDFDIKPQPSFNKNFDLLVENLVDNERKGLLNII
CSESEKQVERLQNIFQELDPTLKVQSLPVSIREGFVDHSVMIACYTDHQIFERYHRYKSN
KKASKTKALTLKELKTLQAGDYVVHVDYGVGRFAGLEKVEVNGNFQEAVRLIFRDDDLLY
VNIHSLHKISKYSGQEGTLPTMSKLGSPEWENKKKKVKRKVKDIAKDLIDLYAKRRTAPG
HQYAQDSVLQVELESSFIFEDTPDQAVATGDVKTDMEKPYPMDRLVCGDVGFGKTEVAIR
AAFKAINDRKQVAVLVPTTILAMQHYRTFKERLEGFPVKVDYINRFRSTKQVKEITKQVT
SGEIDILVGTHRIVNKDIQFKDLGLLIIDEEQKFGVKVKDQLKELRVNVDVLTLTATPIP
RTLHFSLMGARDLSVIATPPPNRQPVTTEIHTFEEEVIRDAVSRELQRGGQVFFVHNRVG
EIDSIANLIMRLIPDAKVAGAHGQMDGKQLEKVMIRFIEGEFDVLVSTNIIESGLDIPNA
NTIIINRAHMFGLSDLHQMRGRVGRSNKKAYCYLLTSPMSGLTAEARKRLQTLEEFSDLG
DGFKVAMRDLDIRGAGNLLGAEQSGFITDLGFEMYHKILDEAVQELKENEFASLFEVDLK
EKVKVLVQDCVIETDMELLIPEDYVTNISERLNLYSKLDNIKTEEELAKFANSVLDRFGP
IPAAVEALFETVRLRWFAERLGFEKLVLKNGQMKCYFVPSTRESYFKSDVFGNIISFIQG
HGKFCKIKEHKNRLILTIGGIKSVDKAKQWLSEMSA
NT seq
3351 nt
NT seq
+upstream
nt +downstream
nt
ttggaaaagaaagcgtttctcaccctatacgagcaagattcctatatcaaaaccgtggca
aaggccattgagtcatctgccggtagcaactttgcttttaagggcatttcaggcagtatg
gacatggttctgttggctgcatttataaacctccgccgtagcagccacctgatcatcgca
catgacaaggaagaagcggcctacctggcaagtgacctcagtagtctgttggataaagtg
gaaccacaggtatttccctcttcctataagcgtccctatcagcacgaagaggtggacaat
gccaatgtgctgatgcgtgcagaaatcctgaacaaagtactcaccaaggataatgacatg
gagattatcgtgtcctatcccgaggcgctttacgaaaaagtcattaacaaaaagtctctc
caagaaaacactttcgtcgcaaaggtgggcgagaaagtggacattgggtttatcgccgag
ctacttagcacttatgactttgataaaacggattttgtatatgagccaggccaatttgcc
atacgcggcggcatcatcgatgtattctcctttgccaatgaatctccttaccgtatagag
ctctttgggaaagaaatagagagtatcaggacttttgacactgaaagccagctatccaag
gaagagctcgaccacatcagcatcatccccaatgtacagaccaagctgatgcaggaggtg
cggcaatccttcacggacttcatgcccaaagaaacctgtgtatggatcaaagacctccag
ttcaccatggacatgctggacaatgccttcgaaaaggccagccagcaatttgaaaagatc
gtcgaccaaaccggaagcaagagcctggtgctcaagccagaaaatctttttgatgatggg
gcggcattcttgcagtctcttgacctcttgaccaaaattgaatttggcaatcagtttcac
ctgccaccatccaaaacttttgattttgacattaagccccagccatctttcaataagaat
tttgaccttttggtcgaaaacctggtggacaatgagcgcaagggtttactgaacattatc
tgttcagagagcgaaaagcaggtggagcggttacagaacatctttcaggaactggatcct
accctgaaagtccaatctttgcctgtaagcatcagagagggttttgtggatcattctgtc
atgatcgcgtgttataccgatcaccagatttttgagcgttatcatcggtataaaagcaac
aaaaaagccagcaagaccaaagcgcttacccttaaggaactcaagaccctacaggcaggg
gattatgtggttcacgtggattacggtgtgggccgttttgccgggctggaaaaagtcgaa
gtcaacggcaatttccaagaagccgtgcggctgatatttcgggatgatgatctcctttat
gtgaacattcattccctacacaagatatcaaaatactccggccaggaaggaacccttccc
accatgtccaagctgggctctccagaatgggaaaataaaaagaaaaaagtaaagcgaaag
gtcaaggatatcgccaaagatctcattgatctctacgccaaacggagaactgctccaggt
caccaatatgctcaggacagtgtgctccaagtggagctcgagagttcatttatctttgaa
gacacccctgatcaggcagtggctactggcgatgtaaagaccgatatggaaaaaccttac
ccgatggacagactggtatgtggggacgtggggttcggaaagacagaagtagccatccgg
gctgcctttaaagctatcaatgaccgcaaacaagtggcggtattggtgcctaccaccatt
ctggccatgcagcattaccgtacattcaaggaacgactggaaggatttcccgttaaggtg
gattatattaaccgttttcgcagtaccaagcaagtcaaggaaattaccaaacaggtaact
tcaggggaaatcgatattctcgtaggcacacaccgcatcgtcaacaaagacattcagttt
aaagacctggggctgctcattatcgatgaggaacagaaatttggtgtaaaggtaaaagac
caactaaaagaactccgtgtcaacgtggatgtgctcaccttgacagcaacacccatcccc
aggaccttgcacttttccctaatgggagcccgtgacctttcggtgatcgccacgcctcca
cccaacaggcagcccgtgaccactgaaatccacacttttgaggaagaagttatccgagac
gcagtttccagagaactgcagcgcggtggccaggtgttttttgtccataacagggtaggt
gaaattgactccatcgccaatcttatcatgcgcctgatccccgatgccaaagtggccgga
gcccatggccagatggacggtaaacaactggaaaaagtgatgatccgatttattgaaggc
gaatttgacgtgctggtatcgaccaatattatcgagtcgggccttgacatccccaatgcc
aataccattatcatcaacagggcccatatgtttggcctcagcgaccttcaccagatgcga
ggcagggtaggcaggagcaataaaaaagcctattgttaccttctcacttcccccatgtca
gggctcacggcagaagcacgtaaacggcttcagacccttgaggagttttctgatctggga
gatggctttaaagtagccatgagagacctggacatccgtggtgccggcaatcttttggga
gccgagcaaagtggctttatcactgatctgggatttgagatgtaccacaaaatcctggac
gaagcagtccaagagctcaaggaaaatgaatttgccagtctcttcgaagtagacctgaag
gaaaaagtgaaagttttggttcaggactgtgtgatcgaaacggacatggaactattgatt
cctgaggactatgtaaccaatatttcagaacggctaaacttatattccaaactggacaat
atcaagacagaagaagaactggccaaatttgccaattctgtattggatcggtttggccca
ataccagcggcagtggaagccctttttgaaacggtccggttacgctggtttgcagaaagg
ctaggttttgaaaagctggtgcttaagaatggccagatgaagtgctacttcgtgcccagc
acgcgggaaagctactttaagtccgatgtttttggaaatatcattagctttattcaaggt
catggaaagttctgtaaaataaaagaacataaaaatcgtttaattcttaccattggtggc
atcaaatccgtagacaaagccaagcaatggctcagcgaaatgagtgcttaa
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