Ehrlichia chaffeensis Osceola: ECHOSC_0217
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Entry
ECHOSC_0217 CDS
T03191
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
echs
Ehrlichia chaffeensis Osceola
Pathway
echs03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
echs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ECHOSC_0217 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
echs03400
]
ECHOSC_0217 (mfd)
Enzymes [BR:
echs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ECHOSC_0217 (mfd)
DNA repair and recombination proteins [BR:
echs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ECHOSC_0217 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
UvrB_inter
MFD_D3
RecG_dom3_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AHX07734
LinkDB
All DBs
Position
complement(225249..228590)
Genome browser
AA seq
1113 aa
AA seq
DB search
MYIKKLIHSAIYIVNQETQLHNLASIFKFYVPNLEIIIFPAWNSIPYKKNSPHNSVMAER
IKTLYSLITRHNDNPYIIISTINAITQKVLHQNIILQSVLKITSLQNITKNHIEDYLTNH
GYSQYSIVQDIGEFATYNNIIDIFPTTYKNPIRIHLNNNLIQSIHYFNRQTQLIDNNSSL
NEVVIYPTSEIIKQKKNIDIFSKTYKTKPNQDQNLLNTIISGKKHIGEENFLPLFYKEEL
QNIFNYISQNTTLIFNDKLINEIKEYNNQIYLNYRSQLSYQVPPPQLYVDSEEFKIITKQ
FHKTIFSQSDNTSNNSAYTDRNIHTSSFNITEKIQNVPNFKTLVQNKQIDIFEILTQYIK
TTCHTKKLIIACYSTGSLEYIQNRLRTLNIKLCKIENYQEICSSYNIAILPIYHSFISKY
TIVIAEHDLLYKQETTNKSNISNIISNDTNLDIGDIVIHKDYGIGKIVALETTKVFDSYH
DFIKIEYYNNDKLFLPVENINLISKYGQQNVNVTLDKLGSTSWQQRKTKIKNHIKKIAKE
LLTIEAARRLSTGKSFFPDENYKHFCNEFSYTETEDQLQAIKDMEHDLSSGKIMNRLICG
DVGFGKTEIALRAAFLVASQNYQVAIIVPTTLLCRQHFIVFTERFKKFPNIKIKQLSKIV
ARSEIKKTKESLSCGQVHIIIGTHAILAQDVTFANLSLLIIDEEQQFGVKQKELLKKIKT
NVHVISLSATPIPRTLYMSLCGIKDLSLIKTPPKNRLAVTTYTTYYEETIIKDAIIREHN
RGGRVFYVCPQISNIKSISDKIRKLVPEIKMNTAHGQLSPTQLDTIMNDFFDGKFTILLT
TSIIECGLDIPFANTIIIHNADMFGLAQLYQLKGRVGRSSTKGFAYFILSEKATNKSAIK
LEIIQSIDSINSGFNLSLHDMDIRGFGNLVGEEQSGNIKDIGIELYQQMLEEELNIYSEY
PKDLDHINININVNIRIPEHYIQDIGLRMRVYKKIGSLKTKEDIDNYYIELTNKFGKLPN
EVENLLNTIYIKQLCANIGIYEVEQIKNSILLKIDSNTTLKQKILNYFINNPLTFKIQNN
SILMLINNSSNCIISFIIHHISKINLLNKKAIL
NT seq
3342 nt
NT seq
+upstream
nt +downstream
nt
atgtatataaaaaaactaattcattctgcaatatatatagtcaatcaagaaacacaacta
cataatctagcatcaatatttaagttttatgttccaaatcttgaaataatcatatttcct
gcatggaattcaataccatataaaaaaaattctccacataattcagttatggcagaaaga
attaaaactctatattccctaatcactagacataatgataatccctatattattatttca
acaattaatgcaattactcaaaaagtattacaccaaaatatcatattacaatcagtatta
aaaattacatctctacagaatattacaaaaaaccatatagaagattacttaaccaatcac
ggatacagtcaatactcaatagtacaagatataggtgaatttgccacttacaacaacatc
attgacatttttcctacaacttataaaaatcccataaggattcatttaaataataatctt
atacaatcaattcactatttcaatcgccaaacacaattaatagataataactcttcttta
aatgaggttgttatttatcccacttctgaaataataaaacaaaaaaaaaatatagatatt
ttttctaaaacctataaaacaaaaccaaaccaagatcaaaacctattaaacacaataatc
tctggaaagaaacacataggagaagaaaatttcttgcctttattttataaagaagaatta
caaaatatttttaactacatatcacaaaacacaacattaatatttaacgataagcttata
aatgagataaaagaatataataatcagatatacctaaattacagatctcaactatcctac
caagtgcctccacctcaactttacgttgattctgaagaatttaaaattataactaaacag
tttcataaaactatattctcacaatctgacaacactagtaataattcagcctataccgat
agaaatatacatacttcttccttcaacattacagaaaagatacaaaacgtcccaaatttt
aaaacattagtacaaaacaaacaaatcgacatatttgaaatattgacacaatatatcaaa
actacatgtcacacaaaaaaattaataatagcttgttactctactggctctttagaatat
atccaaaatagacttagaacattaaatatcaaactatgcaaaatagaaaactatcaggaa
atatgctcttcatataatattgctatattaccaatatatcacagctttatctcaaaatat
actattgtcatagcagaacacgatctattatataaacaagaaacaactaataaaagtaac
atttcaaatattattagcaatgatactaacctagatattggagatatagtaatacacaaa
gactatggtattgggaaaatagtagcacttgaaactactaaagtatttgatagttatcat
gatttcatcaaaatagagtactataacaacgacaaactattcttacctgtagaaaatatt
aatcttatatccaagtatggacaacaaaatgtcaatgttacccttgataaactaggcagt
acatcatggcaacaacgtaaaactaaaataaaaaaccatatcaaaaaaattgcaaaagaa
ttattaactatagaagcagcaagaagactctctactggcaaatcatttttccctgatgaa
aattataaacacttctgtaatgaattttcttatactgaaacagaagatcaattacaagcc
ataaaagacatggaacatgatctatcaagtggtaaaataatgaatagattaatttgcgga
gacgttggctttggaaaaacggaaatagctttacgagcagcattcttagtagcaagtcaa
aactaccaagtagcaattatagtaccaacaactctactgtgcaggcaacattttattgtt
tttactgaaagattcaaaaaatttcctaatattaaaatcaaacaattatctaaaattgtt
gcgagatccgaaataaaaaaaactaaagaaagtttatcatgtggacaagtacatataata
ataggaacacatgccatattagcacaggacgttacgtttgctaacttaagcctattaatt
atagatgaagaacaacaatttggagtaaagcaaaaagaattactaaaaaaaatcaaaaca
aacgttcatgtaatttcactatctgcaactccaataccacggacactgtacatgtcacta
tgtggaataaaagatttgagtttaataaaaacaccaccaaaaaatagattagcagttaca
acttatacaacatattatgaagaaactataataaaagatgctataatacgagagcataat
agaggcggtagagtattttatgtttgtccacaaattagtaatataaaaagcatcagcgac
aagataagaaaattagtaccagaaataaaaatgaacactgcccatggacaactttcccct
acccaacttgacacaataatgaacgatttttttgatggcaaattcacaatattacttact
acatcaattatagaatgtggattagatatcccttttgccaatacaatcataatacacaat
gccgatatgtttggattagctcaactctaccaattaaaaggaagagtaggacgtagcagt
accaagggttttgcatattttatattatctgaaaaagcaaccaataaatctgctataaaa
ctggagataatacaatcaatagattctataaattcaggatttaatttatcattacatgac
atggatatcagaggatttggtaatttagtgggagaagaacaatcaggtaacataaaagat
ataggcattgaactataccaacaaatgttagaagaagaacttaacatttatagtgaatat
cctaaagatcttgaccatataaatatcaatatcaatgttaatataagaattcctgagcat
tacattcaagatataggattaagaatgcgagtatacaaaaaaattggcagtcttaaaaca
aaagaagacatagataattactatatagagttaaccaataagtttggtaaattgccaaac
gaagtagaaaacttattgaacaccatatatataaaacaactgtgtgcaaatattggcatt
tatgaagtcgaacaaataaaaaacagcatccttttaaaaatagatagcaatacaactctt
aaacaaaaaattcttaattattttatcaataaccctctaacttttaagatacaaaacaat
agtatacttatgctaattaacaacagttccaattgcattataagttttattatacaccac
attagcaaaataaacctattaaacaagaaagcaatattataa
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