Escherichia coli SMS-3-5 (environmental): EcSMS35_2333
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Entry
EcSMS35_2333 CDS
T00672
Name
(GenBank) putative helicase
KO
K19789
DNA repair protein RadD
Organism
ecm
Escherichia coli SMS-3-5 (environmental)
Brite
KEGG Orthology (KO) [BR:
ecm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ecm03400
]
EcSMS35_2333
DNA repair and recombination proteins [BR:
ecm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factor
EcSMS35_2333
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ResIII
DEAD
Helicase_C
SWI2_SNF2
AAA_30
UPF0547
AAA_16
SLFN-g3_helicase
zf-tcix
AAA_22
zinc_ribbon_2
zf-ribbon_3
AAA
TerL_ATPase
DZR
Motif
Other DBs
NCBI-ProteinID:
ACB18001
UniProt:
B1LKT3
LinkDB
All DBs
Position
2366292..2368052
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AA seq
586 aa
AA seq
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MIFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKE
LVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDECH
RIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRD
CIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPH
IINQIMEFAATRKGVMIFAATVEHAKEIVGLLPTEDAALITGDTPGAERDVLIEDFKAQR
FRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNP
HDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQGWFEDDDG
HREQCDFRFRFKNCPQCNAENDIAARRCRECDTILVDPDDMLKAALRLKDALVLRCSGMS
LQHGHDEKGEWLKITYYDEDGADVSERFRLQTPAQRTAFEQLFIRPHTRTPGIPLRWITA
ADILAQQALLRHPDFVVARMKGQYWQVREKVFDYEGRFRRAHELRG
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
atgatttttacactccgcccatatcagcaagaagccgtggatgccacgctcaaccatttt
cgtcgtcataaaacccctgccgtaatcgtgctgcccaccggtgcaggtaaaagcctggtg
atagcggaactggcgcggctggcacgtggtcgcgtgctggtgctggcacacgttaaagaa
ctggtggcgcaaaaccatgcaaaatatcaggcgctggggctggaagccgatatttttgcc
gccgggctaaagcgcaaagagagccacggtaaagtggtatttggcagcgtgcagtcggtc
gcccgtaatcttgatgcctttcagggtgaattttcgctgttgattgtcgatgaatgtcac
cgtattggtgacgatgaagagagccagtatcagcaaatcctcactcacctgaccaaagtg
aatccccacttacgcctgctggggctgactgccacgccttttcgactgggcaaaggctgg
atttatcagttccattatcacggcatggtacgcggcgatgagaaagcccttttccgtgac
tgcatttatgagctgccgctgcgttatatgattaaacacggctatctgacgccgccagaa
cgactggatatgccagtagtgcaatacgatttcagccgcttgcaggcacagagtaacggg
ctgttcagcgaagccgatctcaaccgtgagctgaaaaaacaacaacgtattaccccgcac
atcatcaaccagattatggagtttgctgcaacgcgcaaaggggtgatgattttcgccgcc
accgttgaacacgcaaaagagattgtgggattactacccaccgaagatgctgcactgatt
actggcgacacccccggcgctgagcgcgatgtgttaattgaagattttaaagcccagcgt
tttcgctatctggtcaacgtcgcggtactgaccaccggatttgacgccccgcacgtcgat
cttatcgccattctgcgccctaccgaatcggtgagtctttaccaacaaattgtcgggcga
ggtctgcgtctcgctcctggcaagactgattgcttaattcttgattatgcgggtaatcct
cacgatctctacgcgccggaagttggtacaccgaaaggcaaaagtgacaacgttccggta
caggttttctgccctgcctgcggttttgccaacaccttttgggggaaaacgaccgccgac
gggacattgattgaacactttggtcgccgctgtcagggatggtttgaagatgacgacggt
catcgcgaacagtgtgacttccgtttccgttttaaaaattgcccgcaatgtaacgcagaa
aatgatattgccgcccgccgttgccgcgagtgtgacaccattctggttgacccggatgat
atgttaaaagcggcgctacgactgaaagacgcgctggtattacgctgtagcggcatgtct
ttgcagcatgggcacgacgaaaaaggcgaatggttgaaaatcacctattacgatgaagac
ggcgcggatgtgagtgagcgtttccgtctgcaaacgcccgcccagcgaactgccttcgag
cagctttttatccgcccgcatacgcgcacaccgggcatcccgctgcgctggatcaccgcc
gccgatatcctcgcccagcaagccttattgcgacacccggattttgtcgttgcccgcatg
aaaggtcagtactggcaagtgcgtgaaaaagtgttcgattacgaaggtcgttttcgtcgg
gcgcacgaattacgcggttaa
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