Escherichia coli O145 H28 RM13516 (EHEC): ECRM13516_1742
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Entry
ECRM13516_1742 CDS
T03011
Symbol
ydbK
Name
(GenBank) Pyruvate-flavodoxin oxidoreductase
KO
K03737
pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:
1.2.7.1
1.2.7.-]
Organism
ecoh
Escherichia coli O145:H28 RM13516 (EHEC)
Pathway
ecoh00010
Glycolysis / Gluconeogenesis
ecoh00020
Citrate cycle (TCA cycle)
ecoh00620
Pyruvate metabolism
ecoh00650
Butanoate metabolism
ecoh01100
Metabolic pathways
ecoh01110
Biosynthesis of secondary metabolites
ecoh01120
Microbial metabolism in diverse environments
ecoh01200
Carbon metabolism
ecoh01210
2-Oxocarboxylic acid metabolism
Module
ecoh_M00307
Pyruvate oxidation, pyruvate => acetyl-CoA
Brite
KEGG Orthology (KO) [BR:
ecoh00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00010 Glycolysis / Gluconeogenesis
ECRM13516_1742 (ydbK)
00020 Citrate cycle (TCA cycle)
ECRM13516_1742 (ydbK)
00620 Pyruvate metabolism
ECRM13516_1742 (ydbK)
00650 Butanoate metabolism
ECRM13516_1742 (ydbK)
Enzymes [BR:
ecoh01000
]
1. Oxidoreductases
1.2 Acting on the aldehyde or oxo group of donors
1.2.7 With an iron-sulfur protein as acceptor
1.2.7.1 pyruvate synthase
ECRM13516_1742 (ydbK)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
POR_N
POR
EKR
PFOR_II
Fer4_7
Fer4_16
Fer4
Fer4_21
Fer4_10
Fer4_9
Fer4_2
Fer4_8
Fer4_6
Fer4_17
Fer4_18
Transketolase_C
Fer4_4
Fer4_15
FlgM
Motif
Other DBs
NCBI-ProteinID:
AHG14409
LinkDB
All DBs
Position
complement(1724119..1727643)
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AA seq
1174 aa
AA seq
DB search
MITIDGNGAVASVAFRTSEVIAIYPITPSSTMAEQADAWAGNGLKNVWGDTPRVVEMQSE
AGAIATVHGALQTGALSTSFTSSQGLLLMIPTLYKLAGELTPFVLHVAARTVATHALSIF
GDHSDVMAVRQTGCAMLCAANVQEAQDFALISHIATLKSRVPFIHFFDGFRTSHEINKIV
PLADDTILDLMPQAEIDAHRARALNPEHPVIRGTSANPDTYFQSREATTPWYNAVYDHVE
QAMNDFAAATGRQYQPFEYYGHPQAERVIILMGSAIGTCEEVVDELLTRGEKVGVLKVRL
YRPFSAKHLLQALPGSVRSVAVLDRTKEPGAQAEPLYLDVMTALAEAFNNGERETLPRVI
GGRYGLSSKEFGPDCVLAVFAELNAAKPKARFTVGIYDDVTNLSLPLPENTLPNSAKLEA
LFYGLGSDGSVSATKNNIKIIGNSTPWYAQGYFVYDSKKAGGLTVSHLRVSEQPIRSAYL
ISQADFVGCHQLQFIDKYQMAERLKPGGIFLLNTPYSADEVWSRLPQEVQAVLNQKKARF
YVINAAKIARECGLAARINTVMQMAFFHLTQILPGDSALAELQGAIAKSYSSKGQDLVER
NWQALALARESVEEVPLQPVNPHSANRPPVVSDAAPDFVKTVTAAMLAGLGDALPVSALP
PDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAACPHSAIRAKVVPPEAMENAPAS
LHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKDRQNPEIKAINMMSRLEHVEEE
KINYDFFLNLPEIDRSKLERIDIRTSQLITPLFEYSGACSGCGETPYIKLLTQLYGDRML
IANATGCSSIYGGNLPSTPYTTDANGRGPAWANSLFEDNAEFGLGFRLTVDQHRVRVLRL
LDQFADKIPAELLTALKSDATPEVRREQVAALRQQLNDVAEAHELLRDADALVEKSIWLI
GGDGWAYDIGFGGLDHVLSLTENVNILVLDTQCYSNTGGQASKATPLGAVTKFGEHGKRK
ARKDLGVSMMMYGHVYVAQISLGAQLNQTVKAIQEAEAYPGPSLIIAYSPCEEHGYDLAL
SHDQMRQLTATGFWPLYRFDPRRADEGKLPLALDSRPPSEALEETLLHEQRFRRLNSQQP
EVAEQLWKDAAADLQKRYDFLAQMAGKAEKSNTD
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgattactattgacggtaatggcgcggttgcttcggtggcgtttcgcaccagtgaagtt
atcgccatctaccctattacccccagttccacgatggcagaacaggctgatgcctgggcc
ggaaacggcttgaagaacgtttggggagacacaccacgcgtggttgaaatgcagtcggaa
gcgggtgcaatcgctaccgtgcatggcgctttgcagacgggtgccctttcaacatcgttt
acgtcatcgcagggtttgctgctgatgatcccgacgctgtacaaactggcaggcgaactc
acaccgtttgtcctgcatgtagcggcacgtaccgttgccacacatgcactctctattttt
ggcgatcattccgacgtcatggcggtgcgccagacgggttgcgcgatgttgtgtgcggca
aacgtccaggaagcgcaagactttgctctcatttcgcacatcgcgacgctgaaaagccgc
gtgccatttattcatttctttgatggtttccgcacgtcccacgaaatcaataaaattgtc
ccgctggccgatgacactattcttgatctcatgccgcaggccgaaattgatgctcatcgc
gcccgggcgctcaacccggaacatccggtgatccgcggtacgtccgccaatcctgacact
tatttccagtctcgcgaagccaccaccccctggtacaacgcggtctatgaccatgttgaa
caggcgatgaatgatttcgctgccgcgacaggtcgtcagtatcagccgtttgaatattac
gggcatccgcaagcggaacgggtgattatcctgatgggctctgccattggcacctgtgaa
gaagtggttgatgaattgctaacccgtggcgaaaaagttggcgtgctgaaagttcgtctg
taccgtcccttctccgccaaacacttgctgcaagctctgccgggatccgtacgcagcgtg
gcggtactggacagaaccaaagaacccggtgcccaggcagaaccgctctatctggatgtg
atgaccgcactggcagaagcctttaataatggtgagcgcgaaaccctgccccgtgtcatt
ggtgggcgctatggtctttcatccaaagaatttggcccggactgtgtactggcggtattt
gccgagctcaacgcggctaaacctaaagcacgctttacggttggtatttacgatgatgtg
accaatctgtcactgccgttgccggaaaacactctgccaaactcggcgaaacttgaagcc
ttgttttatggccttggtagtgatggcagcgtttccgcgaccaaaaacaatatcaagatt
atcggtaattccacgccgtggtacgcacagggctattttgtttacgactccaaaaaagcg
ggcggcctgacggtttctcaccttcgcgtgagcgaacagccgattcgttccgcttatctc
atttcccaggctgattttgttggctgccaccagttgcagtttatcgataaatatcagatg
gctgagcgtttaaaacctggcggcattttcctgcttaatacgccgtacagcgcagatgaa
gtgtggtcgcgcttgccgcaggaagttcaggccgtgttaaaccagaaaaaagcgcgcttc
tatgtgattaacgcggcgaaaatcgcccgcgaatgtggcctggcggcccgtattaatacc
gtcatgcagatggcttttttccatctgacgcaaattctgcctggcgatagcgccctcgca
gaattgcagggtgcgattgccaaaagttacagtagcaaaggtcaggatctggtggagcgc
aactggcaggctctggcgctggcgcgtgaatccgtagaagaagttccgttgcaaccggta
aatccgcacagcgccaatcgaccgccagtggtttccgatgccgcccctgatttcgtgaaa
accgtaaccgctgcgatgctcgccgggcttggtgatgccctccccgtttcggcgctgccg
ccagacggcacctggccgatgggcaccactcgctgggaaaaacgcaatatcgccgaagag
atccccatctggaaagaggaactctgtacccaatgtaaccactgcgtcgccgcttgccca
cactcagctatccgcgcaaaagtggtaccgcctgaagcgatggaaaacgcccctgccagc
ctgcattcgctggatgtgaaatcgcgtgatatgcgcgggcagaaatatgtcttgcaggtg
gctccggaagattgcaccggttgtaacttgtgcgtcgaagtttgcccggcgaaagaccgt
cagaatccagagattaaagccatcaatatgatgtcgcgcctggaacatgtcgaagaagag
aaaatcaattacgatttcttcctcaacctgccagaaatcgaccgtagcaaactggaacgt
attgatattcgtacatcgcagctgattacaccgctgtttgaatattccggtgcttgctcc
ggttgtggcgagacgccgtatattaaattgctgactcagctctatggcgaccggatgttg
atcgctaacgccaccggctgttcttcaatttatggcggtaacctgccctctacaccgtat
accaccgatgccaacggtcgtgggccggcatgggcgaactctctatttgaagataatgcc
gaatttggccttggtttccgcctgacggtcgatcaacaccgtgtccgcgtgctgcgtctg
ctggatcaatttgccgataaaatcccggcggaattactgacggcgttgaaatcagacgct
acgccagaggttcgtcgagaacaggtcgcagctttacgccagcaactcaacgatgttgcc
gaagcacatgaactgctgcgtgacgcagatgcactggtagaaaaatcaatctggctgatt
ggtggcgacggctgggcttacgatatcggctttggcggtctggatcatgtattgagtttg
acggaaaacgtcaacattctggtgctggatacgcaatgctattccaacaccggtggtcag
gcgtcgaaagcgacaccgctgggtgcagtaactaaatttggcgagcacggcaaacgtaaa
gcgcgtaaagatcttggcgtcagtatgatgatgtacggtcatgtttatgtggcgcagatt
tctctcggcgcgcaactgaaccagacggtgaaagcgattcaggaagcggaagcgtatccg
gggccatcgctgatcatcgcttatagcccatgtgaagagcatggttacgatctggcactc
agccatgaccagatgcgccaactcacagctaccggcttctggccgctatatcgcttcgat
ccgcgtcgtgccgatgaaggcaaactgccgctggcgctggattcacgcccgccatcagaa
gcactggaagaaacgttacttcatgagcaacgtttccgtcgtctgaattcgcagcagcca
gaagtggcagaacagttatggaaagatgctgcagctgatttgcaaaaacgctatgacttc
ctggcacaaatggccggaaaagcggaaaaaagcaacaccgattaa
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