Candidatus Electrothrix communis: QTN59_16560
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Entry
QTN59_16560 CDS
T09821
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ecom
Candidatus Electrothrix communis
Pathway
ecom03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ecom00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
QTN59_16560 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ecom03400
]
QTN59_16560 (mfd)
Enzymes [BR:
ecom01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
QTN59_16560 (mfd)
DNA repair and recombination proteins [BR:
ecom03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
QTN59_16560 (mfd)
BRITE hierarchy
Motif
Pfam:
DEAD
Helicase_C
TRCF
UvrB_inter
CarD_TRCF_RID
ResIII
UB2H
MFD_D3
RecG_dom3_C
AAA_22
AAA_30
Motif
Other DBs
NCBI-ProteinID:
WLE96285
LinkDB
All DBs
Position
3740425..3744138
Genome browser
AA seq
1237 aa
AA seq
DB search
MYSAAAVLASSFVIKKYFGRAETMLSICKQLSGKEGRQGKKIAICGLHGGSAALFAARLQ
EIQQQTLCCLVPSDDLLDSLAGDIRLFTDIPVLTYPAFEIAPYTQLAPDPATVAARLATL
YFLQEGSGPCIVLTSVEAVLRRILPQQALSQSCELVMAGEDTDRDALISSLIDAGYQSCE
LVRQPGDLAVRGGIVDLFPPAFGFSGGPAGQGPLRLDFFGDTVESIRVFDPLTQRSEEEL
EEVVLLPASDILFPASSAVEKWRQDLYLAVEDFAPDHADSDEFRQIMQQLRDRIRFPGIE
FLLPLIYREPGPQTLFDYLPADCPCILYDPVTIRRKMILVRERIAANYEDAASEGGHGLA
LPPKTLFVEQEELERSLGERPWVDLCLYPDPDAAQTPILQQVGDHSLLRQEIELQRKKRG
VLAPLADRLLKWQKAEDTVIFACRSGRQVEHLEEMLAGYGIQCGRGATPLDLQKQYPGQV
LLVEHPLSQGFDLPEEQLHILSAAELFGEKRLQPGRRKKGSRPQGEPVALEEISVGDVVV
HRDHGLASFQGLVNMDFAGQRGDFMLLEFLGNDKLYIPVHQLHWVSRYQGLTDQQPKLDR
LGSQRWQTAKKKVTEAVWQVAQELLAIYARREIRKGHCFQPPGILFKELAESFPYDETEG
QAKAIDEVLKDLCSDKPMDRLVCGDVGYGKTEVAVRAAYKAIEDGFQVAVLVPTTVLAEQ
HAATFRERFSGFDVEVACTNRFRSTKEQKDIVRELKEGHVNLVVGTHRLLSKSIVFQKLG
LLIVDEEHRFGVSHKEKIKKLRADVDVLTLTATPIPRTLQMSLLGIRDLSVISSPPRQRR
AVKTFLARHDDLVIRESVQQELERGGQVFFVHNRVKSIHRIAEQIEQLVPHARIAVAHGQ
MPGKHLEDIMVSFINHEVDILVSTTIIESGLDIPNANTIIINRADRIGLADMYQLRGRVG
RSSRQSYAYLLVPSTEQMTADAGQRLRALMDCSELGGGFKLAMNDLQIRGGGNLLGVSQS
GHIAAVGYDLYLELLQSTVADLKKQAEQGGDLSEPEVEPDVKLRVSAFLPDDYVRDTVLR
YRLYRRLSVAGNEDPELLADLRDEVIDRFGALPREAETLFALVGLKYPLRKLGITKLEQG
PANLVFSFSEHSPIAPETLLAFIEHSRPKKSKTPKKKKEPRPIRGLRVPARLPTPTPEPV
RLTPDQRLIIALDENAEQGDLFRRIDRVLGFFGTQEG
NT seq
3714 nt
NT seq
+upstream
nt +downstream
nt
ttgtattctgccgcagccgtgcttgcttcctcttttgtcattaaaaaatatttcggcaga
gcggaaaccatgctgtcaatctgcaaacagctgtccggcaaggaagggcggcaggggaag
aaaatagcaatctgcgggttgcacggcggcagcgcggccttattcgcagcccggcttcag
gaaatacagcagcagaccctctgttgccttgtcccttccgatgatctgcttgattctttg
gctggggatattcgcctctttaccgatatcccggtccttacctatccagcctttgagata
gctccgtatactcagctcgccccagatccagccaccgtggcggcccgtcttgccactctt
tatttcctccaggaaggcagtggcccctgtattgtcctgacctcggtcgaggctgttctg
cggcggattttaccgcaacaggccttgagccaaagctgtgaactggtcatggccggtgaa
gacacggaccgggatgccctgatctcctccctcattgatgccgggtaccagtcctgtgag
ctggtgcgtcagcccggtgacctggctgtgcgtggtggtattgttgatctctttccgcct
gctttcgggttttctggcgggcctgccggtcaagggcctctgcgccttgatttttttggc
gatacagtggagtccatccgggtttttgatccgttgacccagcgctctgaggaggaatta
gaggaggttgtgctcctgcccgcctcggatatcctctttcctgcctcgtctgctgtggaa
aagtggcggcaggatctgtaccttgctgttgaagattttgccccagaccatgctgattct
gacgagttccggcaaatcatgcagcagttgcgagaccggattcgttttccagggattgaa
tttcttctcccgcttatttaccgggagcctggcccgcagaccctgtttgattatctcccc
gctgactgcccttgtattttgtatgatccggtgactatccggcgcaaaatgatcttggtg
cgggaaaggatagcggcgaattatgaggatgccgcaagcgaaggaggtcacgggctggcc
ctgccgccgaaaacgctctttgtggagcaggaggaattggaacgaagcctcggagagcga
ccctgggttgatctctgtctttatcctgatccggacgctgcccaaacgccgattctccaa
caggtaggtgatcattccctgctccggcaggagatagagctgcaacggaaaaaacgaggg
gtactggccccgcttgctgaccgtctcctgaaatggcagaaggctgaggatacggttatt
tttgcctgtcgctccggcagacaggtagagcatctggaagaaatgttggcaggatacggc
atccaatgtggtcggggggcaaccccgcttgatctgcaaaagcagtatccggggcaggtg
ctccttgttgagcatcccctgtcccagggatttgatttgccggaagagcagctgcatatc
ctttcggcagcggaactcttcggggaaaaacgcctccagccgggccgcagaaagaagggg
agcaggccccaaggtgagcctgttgccttggaggagatctctgtcggggatgttgttgtc
caccgggatcacggcctggccagcttccagggactggtcaatatggattttgccgggcag
cgcggtgatttcatgctgcttgagtttctgggtaatgataagctctatattccggtacat
cagctgcactgggtcagtcggtatcagggcctgacggatcagcagcctaagctcgatcgg
ctaggctcccaacgctggcagacagccaagaaaaaggtcaccgaggcagtctggcaggtt
gcccaggagttactggctatctatgcccgccgtgagatccgcaagggtcattgttttcag
ccgccgggcatcctttttaaggagctggcagagtcctttccttatgatgagaccgaaggg
caggccaaggccattgacgaggtgctcaaggatctctgttcagataaacctatggatcgg
ctggtctgtggcgatgtgggctacggcaagaccgaggtcgcggtcagggctgcttataag
gccattgaagacggttttcaggtggcggtcttggtgcctaccacggttttggcggaacaa
catgcagctacctttcgggagcgtttttccggttttgatgtggaagttgcctgcaccaac
cgttttcgcagcaccaaggaacagaaggatattgttcgggagctgaaagaggggcatgtc
aatctggtggtagggacccatcgtctgctctctaaaagtattgtttttcagaagctgggc
ctgctgatcgtggatgaggagcaccggttcggggtttcccataaggaaaagatcaaaaag
ctgcgggctgatgtggatgtgcttactctgacagccaccccgatcccccgcaccttgcag
atgtctcttttggggattcgcgatctgtccgtgatttccagtccgccccggcagaggcgt
gcggtcaaaacctttctcgcccgccatgatgatctggtgatccgggagtcagtgcagcag
gagctggaacggggaggtcaggttttctttgtgcataatcgagtgaaatccatccatcgg
attgcggaacagatcgaacagctggttccccatgcccgcattgcggtggcccacggccag
atgccaggcaagcatctggaagatatcatggtcagctttatcaatcatgaggtggatatt
ctggtcagcaccacgatcattgaatcaggcttagatattcccaacgccaataccattatt
atcaaccgggccgatcgaatcgggcttgcggacatgtaccagttgcggggcagggtagga
cgttcttcccgccaatcctatgcctatctgctggtaccgtccaccgagcaaatgacggca
gatgccggacagcggctgcgggccctgatggattgttccgagctgggcggcggttttaaa
ctggccatgaatgatcttcagattcggggtggcggcaatttgctcggtgtctcccaatcc
ggccatattgccgctgtggggtatgatctctatcttgaactgctccagtccacggtggcg
gatctgaaaaaacaggcggaacagggaggcgatctgtccgaacctgaagtggaacccgat
gtcaagttgcgggtgtccgcctttctgccggatgattatgttcgggatactgtcttgcgc
tatcgcctgtatcgtcgcctttctgtggccggtaatgaagatccagagctgttggccgac
ctgcgggatgaggtcattgaccgcttcggtgccttgccccgtgaggcagagaccctgttt
gccctggttggtcttaaatatccgcttcgtaaactgggtatcaccaagcttgaacaggga
ccggccaatttggtgttcagcttcagcgagcattctccgattgctccggaaaccctgctc
gcctttattgagcattctcgtccgaaaaaatcgaaaactccgaaaaaaaagaaggagccc
cgtccgatcagggggctgcgtgtaccggcaagactcccgacgccgacacctgagccggta
cgtctgactccagatcagcggcttattatcgcccttgatgaaaatgcagagcaaggagac
ctgtttcggcggatagacagggttctcggttttttcggtacgcaagagggctga
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