Ezakiella coagulans: M1R54_08685
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Entry
M1R54_08685 CDS
T08131
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ecou
Ezakiella coagulans
Pathway
ecou03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ecou00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
M1R54_08685 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ecou03400
]
M1R54_08685 (mfd)
Enzymes [BR:
ecou01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
M1R54_08685 (mfd)
DNA repair and recombination proteins [BR:
ecou03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
M1R54_08685 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
IstB_IS21
RecG_dom3_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
UQK60579
LinkDB
All DBs
Position
1824391..1827801
Genome browser
AA seq
1136 aa
AA seq
DB search
MERIKKEPVLESFLRAYKDGMSALISGVGDEFLDYLITLVAGEDRPFFAVFPTEAEAKQF
VDRINEEEIVCEYMPPREKIYYEIKVIDDKVQKDRLSVFQRMINGEVKLIALSLFTLYDF
NLNLDFYRDKIIKIKKGDRFNFEELVSMLISSGFKREPEVSSRGEFSLRGDIVDIFPICG
DGLVRIEFFDDEVDTIRLVDSDSRLSTEYIDEVEIFPSEELIIDDYTKKSLIDGILQDLE
KKENREDYKKFDIILEKLRDDSYSSEREILFSYFPEELKVRTFDLVKDYNILFIYPDLAK
KEILSYYEYLDMELSHLYLSHEIMDEDIYGDRLFEPDAIKEIKKRSFYVSGLPYNINDVL
NFELKIKSVPKYGRDFNEIFKDISKYENENYRIYLSASDDVKIKAVEESFLEHGFPYTYE
DSDENNIVITKKSISNGFVLPSINLVVFGDLNIFGFGEKRGKRKKSKSSSNLRIQDINVG
DYVIHEDHGVGEYNGVKTLDIKGVRKDYLEILYKDKDKLYLPVENINQIDKYTSKEGAKP
RIYGLDSIQWKKTKEKTRKAINEMARELIELYAVRSKKEGFQFSKDTEWQHEFEDSFKYV
ETEGQLMAIDEIKADMESKKPMDRLLLGDVGYGKTEVALRAAFKAIMDGKQVAMLTPTTL
LAEQHTKTAEERFKNFPVKIRNLSRFRTKKEIDKTVKDLAIGQVDMVIGTHRLLSKDVKF
KDLGLLIIDEEQRFGVKHKERIKSLAEDVDVLTLSATPIPRTLSMSLSGIRSMSVIEEPP
HNRIPVQTYVLEYNENIIRSAVLKEINRGGQIFFLYNDVKSMEVIKGKLEELIPEARFFI
ANGQMSERELEDVFYRFENKESDVLITSTIIETGMDLPNVNTLIVYNSDRFGLSTLYQLR
GRVGRSNRLAYAYFTYDKSRSISEKAIKRLMAMKEFTDFGSGYKIAMRDLELRGAGNVLG
LSQSGHMAEVGYELYMKYLNYAIGELQGKPVRETLNTKIDFMVESAVPEGFIEDTYIRME
LYRRISNIQTFKEKDDLTDEIIDRFGDIPEALINLLNIGLIKNIASKHFVKSIIENNNII
KIDYAPEMLDDVDMAKLLKDFPDGLRFDSKLPIIRISIKVNAIETVYKFFNSAFGV
NT seq
3411 nt
NT seq
+upstream
nt +downstream
nt
ttggaaagaataaaaaaagagcctgttcttgaaagttttttgagggcgtataaagatggg
atgtcggcacttattagtggtgtaggcgatgaatttttggattatcttataacccttgta
gcgggtgaggataggcctttttttgctgtatttccaacagaggcggaagcaaaacaattt
gtagatagaataaatgaagaagaaattgtttgcgaatatatgccgccacgagaaaaaatt
tattatgaaataaaggtaattgacgataaggttcaaaaagaccgcttatctgtttttcaa
agaatgataaacggtgaggtaaagctgattgcactttcgctttttactctatatgacttc
aatttaaatttggacttttatagagataaaattattaaaattaaaaaaggtgacagattt
aattttgaagagcttgtttcgatgcttatttccagtggatttaaaagggaaccggaagtc
agttcgagaggggaatttagtcttcgaggggatattgtagacatttttcctatttgtgga
gacgggcttgttagaattgaatttttcgatgacgaggttgacacaataaggctagttgat
tctgacagcagactttcgactgagtatatagatgaggttgaaatttttccgagcgaagaa
cttataatcgacgattatacaaaaaagtcactcattgacggaattttacaagatttagag
aaaaaagaaaatagagaggactataaaaagttcgatattattttagaaaagcttcgagac
gattcatattccagtgaacgtgaaattttgttttcgtattttccggaagagcttaaagtt
aggacttttgatttggtaaaggactataatattctttttatttatccggatttagcgaag
aaagaaattttaagttattatgagtatttggatatggagctcagtcatttatatttgagt
cacgaaataatggacgaggatatttatggagacagactttttgaaccggatgcgattaaa
gaaattaagaagcgttcattttatgtttcgggacttccatataatataaatgatgtttta
aatttcgaacttaaaataaaaagtgttccgaaatacggtcgtgatttcaatgagattttt
aaagacatttcaaaatatgaaaatgaaaattataggatttatttgagtgcgagtgacgac
gttaagataaaagctgttgaagaaagttttttggaacacggttttccttatacttacgaa
gacagtgacgaaaataatattgtaataaccaagaagtcaatatcaaatggttttgtgctt
ccaagtattaatttggttgtattcggtgatttaaatatttttggcttcggtgaaaaaaga
ggaaagcgaaaaaaatccaagtcatcttcgaatttgcgtattcaggatataaatgtagga
gactatgtaattcatgaagaccatggggttggtgaatataacggcgttaaaacactcgat
ataaagggcgtgagaaaagattatcttgaaattttatacaaggataaagataagctttat
ttgcctgtcgaaaatataaatcaaattgacaagtacacatcaaaagaaggagcaaagccg
agaatttatggtttggacagtattcaatggaagaaaaccaaagaaaaaactagaaaagca
ataaatgaaatggcaagagagcttatcgagctttatgccgtaagaagcaaaaaagaggga
tttcagtttagtaaagatacggaatggcaacatgagtttgaagacagttttaaatatgtt
gaaacggaaggtcagcttatggcgattgatgaaattaaagctgatatggaatcaaaaaag
ccgatggataggctccttttaggagatgttggatacggtaagactgaagttgcacttagg
gctgctttcaaagccataatggacgggaaacaagttgcaatgctcacacctacgacactg
cttgcggagcaacacacgaaaacagcagaggaaagatttaaaaactttcctgtgaaaatc
agaaatttaagtcgtttcagaacaaaaaaagaaatagataagacggtaaaagaccttgca
attgggcaagtggatatggtcatcgggacgcataggcttttatcaaaagatgtaaagttt
aaagatttaggtcttctaataatagacgaggagcaaaggttcggagtaaaacacaaggag
agaattaagtcgcttgcggaggacgtcgatgttttgacgctttcagcaacgccaattcct
agaacgctttctatgagtttgtccggtatacgatcgatgtcggtcatcgaagaaccaccg
cacaacagaataccggtacagacttatgttttggaatataatgagaatattattagaagt
gctgttttaaaagaaattaatcgtggcggtcaaattttctttttatacaacgatgtaaaa
agtatggaagtaataaagggaaaacttgaagagcttattccggaagcaagattttttatt
gcaaatggacaaatgtcggagagagaacttgaagatgtattttatagatttgaaaataaa
gagtcggatgttttaatcacgtcaacaattattgagacgggtatggatcttccgaatgtt
aacacattgattgtatacaattccgatagatttgggctgtccacactttatcagctgaga
ggaagggttggaagaagcaatagacttgcctatgcatattttacttacgataagtcacgt
tccatttcagaaaaagctataaaaagactcatggcgatgaaagaatttacagactttggg
agtggatacaagatagcgatgagagaccttgaacttagaggggcgggaaatgtattagga
cttagccaatctgggcacatggctgaagttggatatgaactttatatgaaatatttaaat
tatgcgattggagagcttcaaggaaaacctgtgcgtgaaacattaaatacaaaaattgat
tttatggttgaaagtgcagtacctgaaggatttatagaggacacgtatataagaatggaa
ctctatagacgcatttcaaatattcagacatttaaagaaaaagatgatttgactgatgaa
attattgacagattcggtgatataccggaagctctaataaatctactgaatatcgggctc
ataaaaaatattgcaagtaaacattttgtaaaaagtatcattgaaaataacaatataata
aaaatagactatgcaccggaaatgcttgacgatgttgatatggcaaagttgctgaaagat
tttccggatgggcttagatttgattccaaattgccgataataagaatttctataaaagtc
aatgcaattgaaacggtgtataaattttttaacagtgcttttggagtttag
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