Etheostoma cragini (Arkansas darter): 117934609
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Entry
117934609 CDS
T07493
Symbol
frem1a
Name
(RefSeq) FRAS1-related extracellular matrix protein 1a isoform X1
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117934609 (frem1a)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Lectin_C
Big_9
Calx-beta
Motif
Other DBs
NCBI-GeneID:
117934609
NCBI-ProteinID:
XP_034712306
LinkDB
All DBs
Position
19:17133934..17171780
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AA seq
2186 aa
AA seq
DB search
MGSQGQTLAWTLFPVFLLALTYPSHGSLVKVNKGLKVRRGQTAYLQDGDLQFHIPRQKDA
CKVEVVLNEPITQQVGKLMPQVFDCHYLADEVKYVHNGCPLLKKDTVKLRLYRFTDTETH
IEVFSLHVDIMEPDCSIIKLGPKSLEVPEFYGLSDTVDGHVVSFHYERRSSLECSIYLSS
HDTHLPAHGQLVTGEPDKATKRGDEPESFIHLRQQLDNKARAMCKSEDCLKGLKRVKFTK
IPCDDFLVMGLRYQHIDPPSPDVDYIAIRLDLKDTRSGSVYQSEKAWIPVRIVGAMPNQP
PKASFMSMFILEVDQFILTPLSTATLDAEDEETPKQLLVFNITKPPAAGFITHLSDHTRP
ISSFTWLDLNDMLIGYQPPNSSHTQRRNYEVEFEVHDFFFEKSPSMTVHISVRNADTNAP
RVSWNMGLSLLEGQSRPIMWEQLQIVDNDNLNAVRIITVDGLQHGQLTVRGGKGFMFTVN
DIKAGVVRYHHDDSDSTKDFIVFRITDGPHQTRHKFPINILPKDDSPPVLITNMLLEVSE
GQMALLRGSTLQASDLDSSDDYILFNITRPPQAGEVMKMPTSGLTGYPVSHFLQKDLSQS
MVYYRHLGNKVYDDYFEVVLSDFHDPPNLSEPQVVMVHIEPVPDQPPKEVPGSSRCLVIK
ETEVVHITRQQLHFVDQESPDSELTYTVTTPPFYTGPHSSPDAGRLFLVDSVPKFTKDSN
APLLRLFTQDAVNFMKVAYMPPVLDIGPYPQYIQFVLSVTNHLGKTVTGICFNITVMPVD
NQPPQVITNPLTVDEGGECWLGPEHLLLSDVDSMEEALQVVLQREPHHGALQLRGLPLNP
GNSFTVQDLKSLKVRYNHDSSETVEDTIEFTATDGTNSGSFVLKVKVIPVNDEVPVLVAG
LKPVLNCAEGQQIVITAEYIYATDADSNNGSLVFLIARQPYHGVVLRNSVVVDSFIQADI
TAGIITYKHTGLEIGLTPRHDTITFVISDGPIENLPLCCSEENPSRTRDVTQLLAQHSLP
VYDLHITVFPVDSQPPSLTKGDILIVDEGGSSAITASHLKASDVDTVQDQLVFSLISPPQ
FGYIENVLPSPGFEKSNTGISIASFTYKDIIDGHVNYVQSRHQRMEPTADQFMLCVSDGI
HSSAHVPFYIIINPTNDEIPQFVARNITVREGQMKQLDSSVLHAMDLDVPKNSMLFSVVR
APQHGSIITHSGENPVYRRGEASPPTPVVDFTMTDLSNGMDLMYMHDDSENMEDSFTIQL
TDGRHQIQRQVMVKVLPVNDEEPRVIRNNGVDVEPGEARLISSVTLFAQDSDTPSSELSY
IFDSVPTQGILQLKEGQDWATLTAGRNCSQEMVDMNLLRYVHTGLNSAKTHDVFVFYLSD
GKNQSPRQHFHISVKDIEKGNIAIFVKPANVSRGDRVVLTTDVLLAHDGTEKPEELLYII
THPPAHGHIEYIKHPGLGISTFSQMDIAANLVAYVHDNRATTPTETFHFVVSNGKTSRNG
SFEIAVEMVDRFLPSLTSNKGLSVPQGSSMILGPDRLAMSDPDTPPSALTFVLLQPPQYG
RLVLGGGTLTAGSNFTQRDIQDMEVTYKHGGGPSQIDRFAFTASDSTKRGFLVDGQLHTE
PVFFTIQIKPLDKSCPKVVKLQPLWKVEHLDDGRRGIFVSSLELKAQDSDSREEELIFCI
VRQPYFGYLENITTGGFVPQRFSQIELTKRTIAYIINPDMESLSDSLEFTVSDPLGNTGP
SHILEFSWSSVELSQSEYSVCEEQGTVSLDIIRTGNLAESSYITVQVKEVTATAGKDFLI
SPSSLVQFDPGVAKRSWRSEIIQDHLEEAEEMFEVLLVSPQGTVIGRNNKAQVTIKDSGR
GQHRRNQDRETPVLGGKEIRSDTYPQHGSIQLEKLPLGTESVIWTRGDSISRPGADVPNW
KLKVMDNPKSIAPSSVFHNGTDIVYTYHGIMQMQVQDDTSALRKGRKANIRVISRGPQQQ
MSTVLTKSKSDPQKKSSKPQETAPNEGRATADDSMPKPCVPELMGLLHFNQTTNQLLHCN
GVSWRPWAPTDQSQMVKAQMCPQGWTFHGGHCYTLSTDHKATWSTANRACRERYKGTLAS
VLSKANMDWLWDFSRRKPFWIGLNDRDGKGRWEWAGGEPVTYTNWRKTPPRSKRKGSKKC
VLVWRRAKWQIRDCKTGRRHHFVCSI
NT seq
6561 nt
NT seq
+upstream
nt +downstream
nt
atgggttcacagggtcaaacactggcctggaccttgtttccagtttttctgctggcattg
acttacccatcacacggttcccttgtaaaagtcaacaagggtttaaaagtgagacggggt
cagacagcctacctccaggacggtgacctgcagttccatattccccgtcagaaggatgca
tgcaaggtggaggtggtgttaaacgagcccataactcaacaagtgggaaaactcatgccc
caggtatttgattgccactatctggctgatgaggtaaagtacgtccataacggctgtcca
ttgttaaagaaggacactgtcaagctacgactgtacagattcacggatacggagacacac
atagaggtgttttctctccacgtggacattatggaacctgattgcagcatcataaagctg
gggcccaaatctctggaggttcctgaattctacggtctctctgataccgtggatggccat
gtggtgtccttccattatgagagaaggtctagtctggagtgcagcatctatctgagtagc
catgacacccaccttccagcccatggccaactggtcaccggagaaccagataaagctacg
aaaagaggggacgagccagagagcttcatccatcttcgccagcagctagataataaagcc
agagcaatgtgtaaatcagaagactgcttgaagggtctgaagcgagtgaagttcaccaaa
attccctgtgatgacttcctggtgatggggctgaggtatcagcacatagaccctccatct
ccagacgtagactacatcgcaatcagactagatctcaaggacaccaggagtggcagcgta
tatcagtctgaaaaggcctggattccagtgcggatagtcggtgcaatgcccaaccagcct
cccaaagcgtccttcatgtccatgttcatcctggaagtggaccagttcatcctcactccg
ctctccactgctacactggacgctgaagacgaggaaacccccaaacagctcttggttttc
aacatcaccaaaccgcctgcggccggcttcatcacccatctgtccgatcacactcgccca
atctcttcctttacgtggcttgatctcaatgacatgctcattgggtatcaacctccaaac
tcctcacatacccaacgcaggaattacgaggtggaatttgaagttcatgattttttcttt
gagaaaagcccgtcaatgactgttcacatatctgtaaggaatgcagacacaaatgcaccc
agagtgtcctggaacatgggtctcagtctgttagagggtcagtctaggccaataatgtgg
gagcagctccagattgtggacaacgacaatttaaatgctgtccggatcatcacggtggac
ggtctgcagcacggacagctcaccgtcagaggtggaaagggcttcatgttcactgtcaac
gacatcaaagcgggcgtggttcgctatcaccacgacgacagcgactctaccaaagacttc
atcgtcttccgcatcaccgacgggccccatcagacccgacacaagttccccataaacatc
ctgccgaaggacgacagcccgccggtcctcatcaccaacatgctgctggaggtgtctgag
ggacagatggcgttactgagaggctctaccctccaggcgtcagacctggactccagcgac
gactacatcctgtttaacatcacccgccccccacaggcaggagaggtcatgaaaatgcca
acatcagggctcacgggatatccagtcagccactttctgcagaaagacttgtcccagtcc
atggtttactatcgtcacctaggaaacaaggtgtatgatgactactttgaggtggtgctg
tcagatttccatgacccccccaacctgtcagagcctcaagtggtgatggtgcacattgag
cctgttccagaccaaccacccaaagaggttcctggctccagtcggtgtcttgtgatcaaa
gaaacagaagtggtccatataacacggcaacagcttcacttcgtagaccaggagtccccc
gacagtgagcttacatatacagttaccactccacctttctacactggtcctcacagcagt
ccagatgctgggaggttgttcttagttgacagcgtacccaaattcaccaaagactccaac
gcaccgctgctgaggctcttcacacaggatgcagtaaacttcatgaaagtggcctacatg
cctccagtcttggatattggcccttacccccagtatatccagtttgttctctctgttacc
aaccacctgggcaaaacggtcactgggatctgctttaacatcactgtgatgccagtggac
aaccaaccaccacaggttattacgaaccctttgactgtggatgagggaggggagtgctgg
cttggccctgaacacttgttgctgtcagacgtggactcaatggaggaagccctgcaggtg
gtgcttcagagggagccacatcatggagctctgcagctacgtggactcccattaaatcca
ggcaactctttcactgtgcaagacctaaaaagccttaaagttaggtacaatcacgacagc
tcagaaactgtagaggacaccattgaatttactgcaacagatggaaccaattcaggcagt
tttgtcctgaaagtgaaggtgattcccgttaatgatgaggtccctgtgttggttgctggt
ttgaagccagttctcaactgtgcggagggacagcaaatagtcatcacagctgaatatatc
tacgctactgatgcagacagcaacaacggcagcctggtcttcctaatcgctcggcaaccg
tatcatggcgtcgttctccgaaactccgttgtggttgatagcttcatccaggcagacatc
actgcagggatcatcacctacaaacacacaggattggagattggactcactcctcgccat
gacaccatcacatttgttatttctgatggaccaatagaaaaccttcctctatgctgcagt
gaagaaaatccctccaggaccagagacgtgacccagctacttgcacaacatagtctgcct
gtgtatgacctccacatcacagtgtttccagttgatagccaaccaccttctctaacaaaa
ggagacatacttattgtggatgaaggggggtcttcagcaataactgcatctcatttgaag
gcctctgatgtggacactgttcaggaccaactggtcttcagtctgatttctccgccccag
tttggctacattgaaaatgtcctgcctagtcctggatttgagaaaagcaacacgggaata
agcatagcttcctttacatacaaagacatcattgacggtcatgtgaactatgtacagtcc
agacaccagaggatggagcctacagctgaccagttcatgctctgtgtgtcagacggcata
cacagctctgcccacgtccctttctacataattattaacccgaccaacgatgagatccca
cagtttgtggctcgtaacatcacagtacgagaaggacaaatgaagcagctggactcctca
gttttgcatgcaatggatctggatgtccccaagaacagcatgctcttcagtgtggtcaga
gccccgcagcatggcagcatcatcacccacagcggtgaaaaccccgtctacaggagagga
gaagccagtcctccaacccctgtggtcgacttcacaatgacagatctttcaaatggaatg
gatctaatgtacatgcatgatgactcagagaatatggaggacagttttaccatccagttg
actgatggcaggcaccaaatccaaagacaggtgatggttaaagtgctgccagtcaatgac
gaggagcctcgtgtcatcaggaacaatggagtggacgtggagccaggagaagccaggctc
atttccagcgttacactgtttgcacaggacagtgatactccttcttcagagctcagctac
atatttgatagtgttcctacccaaggaatacttcagcttaaggaaggccaggattgggcg
acactgacagcggggagaaactgctcccaggagatggtggacatgaaccttctgcgctac
gtgcatacaggcctgaacagtgctaaaacacatgacgtctttgtcttctacttgtcggat
ggaaagaatcaatcaccacggcagcacttccacatctctgtcaaagatatagaaaaagga
aatattgccatctttgtgaagccagccaacgtcagccgtggagatcgcgtggttctcacc
acagatgtgctgttagcccacgatggcacagaaaaacccgaggagcttctgtatatcatc
acccaccctccggctcacggacacatagagtacatcaaacatcccggactgggcatctcc
accttcagccagatggacatagcagccaaccttgtggcttacgtgcatgacaaccgagcc
accacacccacagaaacctttcactttgttgtgagtaatggtaaaaccagccgaaatgga
agctttgagattgcagtggaaatggtggatcgcttcctgccgtctcttacctccaacaaa
ggcctctccgttccacaaggctcctccatgatcctgggtcctgaccgccttgccatgtct
gaccctgacactccacccagcgccctgacctttgtcctcctccagcctccacagtatggc
aggctggttttaggtggtggaacactaactgctggctcaaacttcactcagagagacatt
caggacatggaggtaacatataaacatggcggggggccgtcgcagattgaccgatttgcc
tttactgcctctgacagcaccaaacggggtttcctggtggacgggcagttgcatactgaa
cctgtgttcttcactattcagatcaagcctttggataagtcgtgtcccaaggtggtgaag
ctgcaacccctttggaaagtggaacatctggatgatggacgacgcgggatcttcgtgtca
tctctcgagctgaaagcccaagacagtgatagcagagaagaagagttgattttctgcatt
gttcgccagccctactttggttacctagaaaacattactacaggtggatttgtaccacaa
cgcttctctcagatagagctgaccaagagaactattgcctacatcatcaacccagacatg
gagtccctctcagacagcctggagttcacggtgtccgatcctttagggaacaccgggccc
tctcacatacttgaattcagctggtcctcagtggagctgtctcagtcggagtactctgtg
tgtgaggagcagggaactgtctcgctggacatcatccggacagggaacctggcagagtct
tcgtacatcactgtccaggtaaaggaggtgactgcaacagctggaaaagattttcttata
agcccctcttccctcgttcagtttgatccaggagtagcaaagagaagctggagaagtgag
atcattcaggatcacctggaggaggcggaggagatgtttgaagtgctgctggtctcccct
caaggcacagtgatcggccgcaacaacaaggctcaggtcacaatcaaagactcaggaaga
ggacagcacaggcggaaccaggatcgggagacccctgttcttggtgggaaagagattcgt
tcagacacataccctcagcatggatccattcaactagagaaacttccccttgggaccgaa
tctgtaatctggacccgtggcgacagcatctctaggcctggagcagatgtcccaaattgg
aaactcaaagttatggacaacccaaagtctattgcaccttcatcggtttttcacaacggg
acggacattgtttacacgtatcatggcatcatgcaaatgcaagtacaggacgacacttcc
gcattgaggaagggcagaaaggcaaacatccgtgtgatcagcaggggaccacagcagcag
atgtcaaccgtgctgactaagtcaaagtcagatcctcaaaaaaagagctcaaaacctcaa
gaaactgcaccgaatgaaggacgcgctacagctgatgactccatgcccaagccctgtgtt
ccagaactgatgggactcctgcatttcaaccaaactaccaatcagctccttcactgcaac
ggtgtctcctggagaccatgggcaccaactgatcagtcacagatggtgaaggcccagatg
tgtcctcagggctggacctttcatggtggccactgttacaccctcagcactgaccacaag
gccacatggagcacagccaacagggcctgcagggagagatacaaaggcacactagcaagt
gttctctctaaagccaacatggactggctgtgggacttcagcagaagaaaaccattttgg
atagggctgaatgacagggacggcaaaggacgctgggagtgggcgggcggtgagccggtc
acctacactaactggagaaagacgccccctcggtccaaaaggaagggaagcaagaagtgt
gtcctggtgtggagacgggccaagtggcaaatcagggactgcaagacgggtagacgtcat
cactttgtgtgttcgatatga
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integrated database retrieval system
