Etheostoma cragini (Arkansas darter): 117939250
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Entry
117939250 CDS
T07493
Symbol
lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
117939250 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ecra03400
]
117939250 (lig4)
Enzymes [BR:
ecra01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
117939250 (lig4)
DNA repair and recombination proteins [BR:
ecra03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
117939250 (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
BRCT_2
DNA_ligase_A_C
BRCT
RNA_ligase
mRNA_cap_enzyme
ATG17_like
Motif
Other DBs
NCBI-GeneID:
117939250
NCBI-ProteinID:
XP_034720318
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All DBs
Position
24:3193127..3198014
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AA seq
911 aa
AA seq
DB search
MEGTSQSDAAGQPSVAAQVPFLHLCTTLEKIQKSKLRPDKSKILKDFIESWRKFHSALHK
DNPKTTDSFYPSMRLLVPSFERERMAYGIKESMLAKLYIDVLGLPKNGPEANKLLNYRAP
TASQGEAGDFAGMAYFVLKKRCTGEGNLSIKEVNDFLDSVAINNASKQKDLVKKSLLHLI
TQSSALEQKWLIRMILKDMKLGISKETVLQVFHPDAPELYNVNTDLNKVCQQLHNPSVSL
SDVSIGLFSAFKPMLAAMANIRSVEKQMGSSPFYIQTKLDGERIQLHKDGDVYKYFTRNA
FEYTQQFGGSPLEGSLTPYIHNNFKSHIVNCILDGEMMAYNPTTDTFMQKGSKFDIKRLM
DDSELQTCFCVFDVLLVNDQKLGKETLKKRYETLQTVFNPVKGRLHLVSKTDARTMQEVV
NALNDAIDSREEGIMVKDPLSIYKPDKRGEGWLKIKPEYVDGLMDELDLLIVGGYWGKGR
RGGMMSHFLCAVAEAPKPGEKPSVFHTLCRIGSGYTMKELYDLGLKLAKHWKVFRRNDPP
ASILCGTEKPEVYIEPCNSVILQVRAAEIVGSDMYKTNCTLRFPRIEKIREDKEWHQCMT
LAELDQFRGKASGKLASRHLRIDGDEPEKKKKRTQLAKPKKMIGIIDHFKSQDLTGVTKE
TDMFEDVEFCILNGTEDHPKAELEKGVASCGGVVVQNAGRDTYCVIAGVENMRVKNLILS
DQHDVVWATWLLECLSQKEVVPWQPRHMIHMSPSTREHFAKEYDSYGDSYFVDTDGQQLR
EVFGRISDAQASAAVNISQVEQRCGWGDLPTSMFRPFQVYMDRYADIGDPKTAIPATCLD
IRALEFRYHGGSVVQKLEEGVTHVIITEETRLLDLRTLRRCFRRKFKIVRDSWVTDSVSA
GYLMNDTDYLV
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atggagggaacttcccaaagcgatgctgcaggtcagccctctgtggctgctcaggttcct
ttccttcatctttgcaccacgttagagaaaatccagaagtctaaactccgtccagataaa
tccaaaatccttaaggatttcattgagtcgtggaggaagttccattctgccctccacaaa
gacaaccctaaaacaacagactctttctacccatctatgcgcctcttagtcccttccttc
gaacgagagcgtatggcgtatggcatcaaagaaagcatgttagctaaactgtacattgac
gtattaggcctcccaaagaatggccctgaggccaataaactgttgaactaccgtgctccc
actgcatcccagggagaagctggagactttgccggcatggcgtactttgtcctgaagaaa
cggtgcaccggcgaaggaaacctcagcatcaaagaagtcaatgactttctggactcggtg
gctatcaacaatgctagcaagcagaaggatcttgtgaaaaagagtctgctgcacctcatc
acccagagctcggctcttgagcaaaagtggctcatcagaatgattctgaaggacatgaag
cttgggatcagcaaagaaactgttctccaagtcttccacccagacgcgcctgagctctat
aacgtcaacacagacttaaacaaggtgtgccagcagctccacaacccctctgtgtctttg
agcgatgtttcaatcggactcttctctgcttttaagcctatgttggcggcaatggcgaac
atccgcagtgtggagaaacagatgggaagcagccctttttacattcagaccaagctggat
ggagagcgtattcaactgcacaaagacggggatgtgtacaagtacttcacccgaaatgct
tttgaatacacccagcagtttggaggatccccactggagggctcactgacaccttacatc
cacaacaattttaaaagccacattgtgaactgtatcctcgatggcgagatgatggcgtac
aacccgaccacagacaccttcatgcagaaagggagcaaatttgacatcaagagactcatg
gacgactctgagttacagacgtgcttctgcgtgtttgacgtgttgttagtcaatgaccag
aagcttggcaaggaaacgctgaagaagcgctacgagacccttcagacagttttcaatcca
gtcaagggaaggctacacctggtgtcaaagacggatgccagaaccatgcaggaggtggtg
aatgccctgaatgacgccattgacagcagggaagagggaatcatggtgaaggatcctctg
tccatctacaaacccgacaagcggggggagggatggctgaaaataaagccagaatatgtg
gatggattaatggatgagctggacctgctgattgttggcggctactggggtaaagggagg
cggggtggtatgatgtcccactttttatgcgccgttgccgaagctccaaagcctggagag
aaaccttcggttttccacacactatgccgcatcggctctggctacaccatgaaggagttg
tatgacctcgggttaaagcttgccaagcactggaaagtcttccggagaaatgacccacca
gcatccatcttgtgtggaacagagaaaccagaagtttacatcgaaccctgcaactcggtc
atcctccaggtcagggcggctgaaatagtcggaagcgacatgtataaaaccaactgcacc
ctgcgcttccctaggatcgagaagatccgcgaggacaaggagtggcaccagtgcatgacc
ctggcagagctggatcagttccgcggtaaggcgtccgggaaactcgcctcgcggcacctt
cgcatcgatggtgacgaaccggaaaaaaagaagaagcgcactcagctggccaaacccaag
aagatgatcgggatcatcgatcactttaagtcccaagacctaaccggggttaccaaggag
acggatatgttcgaggatgtggagttttgtatcctgaacggcacagaggatcaccccaag
gctgagctggaaaagggcgtggccagttgtggaggtgtcgtggttcaaaacgcaggacgg
gacacctactgcgtgattgccggcgtggagaacatgcgcgtgaagaacttgattttgtcc
gaccaacatgacgtggtgtgggccacatggctgctcgagtgccttagccagaaggaagtg
gtcccatggcaaccacgccacatgatccacatgtcgccctcgaccagggagcactttgcc
aaggagtacgacagctacggggacagctactttgtggacacagacgggcagcagctgcgg
gaggtgtttggccggatcagcgacgcgcaggcgtctgcagcggtgaacatcagccaggtg
gagcagcgctgtggctggggggatcttcccaccagcatgttcagacccttccaggtttac
atggaccgctacgccgacataggagaccctaaaaccgccatccctgccacctgcttggac
atcagggcgctggagtttcgctaccatggcgggagtgtggtgcagaagttagaggaagga
gtcactcatgtcattatcacagaggaaacaagacttctggatttaaggactctgaggcgc
tgctttaggaggaagtttaagatcgtaagagactcctgggtgaccgattcagtctcagca
gggtatctgatgaatgacactgactacttagtttaa
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