Etheostoma cragini (Arkansas darter): 117952736
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Entry
117952736 CDS
T07493
Symbol
upf3a
Name
(RefSeq) regulator of nonsense transcripts 3A isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra03013
Nucleocytoplasmic transport
ecra03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117952736 (upf3a)
03015 mRNA surveillance pathway
117952736 (upf3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecra03019
]
117952736 (upf3a)
Messenger RNA biogenesis [BR:
ecra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
117952736 (upf3a)
mRNA cycle factors
P-body specific factors
117952736 (upf3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
117952736
NCBI-ProteinID:
XP_034741145
LinkDB
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Position
11:complement(9303396..9309267)
Genome browser
AA seq
464 aa
AA seq
DB search
MRSEKDQMTVGKEKSVVEIQFRDIPREQENIPCNFKPKEEKKEVFTKVVIRRLPPNLSKD
QLEEQLSPLPSYDYFEFFPADQSLSPHLFSRAYINFKNNEDILLFRDRFDGYVFIDNKGQ
EYPAVVEFAPFQKISKKKLKKKDAKSGSIEEDPEYKRFLENYSCDEEKSMANPETLLGEI
EAKTRELIAKRTTPLLEYIKNKKIEKQRIREEKREERRRREIEKKRQREEEKRKRRDEER
RKRKEADKQKKLSDKDIKIKLLKKSDRDDDMDSDRMKDKTDIRETDRGKWEKAGGQTKLK
DPKEKGLPESEKEQREQHGRRQRDKDHRGKDEERKRQRHHYEFDKFMRRKDETKWGKGYC
QDRARKEGHHHAYSYCPDIGDKLGKEDRQDLGNRKERLRNKVSEKDRPAMQLYQPGARNR
KRMSSAGKGYDCIPSPESGTEHGYEAVTLATGLEKGFEKSKDEQ
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atgaggtctgaaaaggaccaaatgaccgtgggcaaggagaaaagcgtcgttgagatacaa
tttagagacatccccagagaacaggaaaacatcccttgcaactttaagccgaaagaagag
aagaaagaggtttttactaaggtggtgattcgaaggcttccacctaacctgtcaaaggac
cagctagaggaacagctcagtccgcttccatcctatgactatttcgagttctttcccgct
gatcaaagtctttctccccatttgttctccagagcatatatcaattttaaaaacaacgaa
gatatccttctcttcagggaccgatttgatggctacgtcttcattgacaacaagggccaa
gaatatcctgcagtggtggagtttgctcccttccagaaaatctcaaagaagaagttaaaa
aagaaagatgccaaatccgggagcattgaagaagacccagagtataagcggttcttggag
aattactcctgtgatgaagagaagtccatggccaaccctgagactctgctgggagagata
gaggccaaaaccagagagctcatagccaaacggacaaccccactgttggagtacattaaa
aataagaaaattgagaaacagagaataagagaggagaagagagaagagaggagaagaaga
gagattgaaaagaaacggcaaagggaggaggagaagagaaagcgacgagacgaggagaga
cgcaaacgaaaagaagccgataagcagaagaaattgtctgataaagacatcaaaattaag
ctcctgaagaaaagtgacagagacgatgacatggactccgaccgaatgaaggacaaaact
gacatcagggagacagacagaggcaaatgggagaaagctggaggacaaacaaagttgaag
gaccccaaagaaaaaggtttgcctgagagtgaaaaggagcagagagagcagcacggccgc
agacaaagagataaagatcaccgtggcaaagatgaagagaggaaacgacagcgacaccac
tatgagtttgacaagtttatgcgccgcaaagatgagaccaaatgggggaaaggctactgc
caggacagagctaggaaagaggggcaccatcatgcctattcttactgtcctgacattgga
gacaaactaggaaaggaggacaggcaggacctgggtaacaggaaggaacgcctccgaaac
aaggtgagcgagaaggaccgtccagccatgcagctctatcagccaggcgcacgcaacagg
aagcgcatgagctcagcaggtaaaggctatgactgcatcccctcacctgaatccgggacc
gagcatggctatgaggctgtcactctggcgacggggctggagaaggggtttgagaaaagt
aaagacgaacagtga
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