Etheostoma cragini (Arkansas darter): 117953609
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Entry
117953609 CDS
T07493
Symbol
upf1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra03013
Nucleocytoplasmic transport
ecra03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117953609 (upf1)
03015 mRNA surveillance pathway
117953609 (upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecra03019
]
117953609 (upf1)
Enzymes [BR:
ecra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
117953609 (upf1)
5.6.2.5 RNA 5'-3' helicase
117953609 (upf1)
Messenger RNA biogenesis [BR:
ecra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
117953609 (upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
117953609 (upf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
AAA_16
Helicase_RecD
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
117953609
NCBI-ProteinID:
XP_034742676
LinkDB
All DBs
Position
12:complement(18784681..18804712)
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AA seq
1113 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEYDFTDFTLPSQTQTQCQTQSQLDNQVNG
PDSMLQNGDDSLVKASQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSK
KWFCNGRGNTSGSHIVNHLVRAKSKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKA
DSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQ
INKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLK
ESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPPWKGIGHVI
KVPDNYGDEIAIELRSSAGAPVEIPHNFQVDFVWKSTSFDRMQSSLKTFAVDETSVSGYI
YHKLLGHEVEDVVIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT
SATIVYHLARQGNGPVLVCSPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLAL
HNQTRNMDSMPELQKLQQLKDETGELSSSDEKRYRALRRTAERELLMNADVICSTCVGAG
DPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLS
QSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ
PDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQRS
YLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNV
ALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVN
TINPGGRFMSTAMYDAREALIPGSVYDRSSNGRSSNMYFQTHDQIGMIGTGSSPMTSLNI
PIPFNLVIPPIPPPGYMGQVNGPSAGRGGGIKSKAGSGGGSGMRGGRQRNRGNMGNHSGG
HGGADRHGGHMSGSQASQDLGSQPFSQGPLTQSYMNMSQPSQMSQPGLSQPELSQDSYLG
DEFKSQIDVALSQDSTYQGERAYQHSVTGLSQY
NT seq
3342 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtcgaggcgtacgggccgagctcgcagactctaacgttcctcgacaccgaggaa
gccgagctgctgggagcggacacccagggctccgagtacgactttaccgactttaccctg
ccgagccagacccagacccaatgccaaacccagagtcagctagataaccaggttaatggc
cctgatagcatgctacagaatggagatgactctttggtaaaagccagtcagctgctggca
gagttgaactttgaggaggatgaggaggacacctactacaccaaggatctccctgtacat
gcatgcagttactgtggcattcatgatccagcctgtgtggtctactgcaacaccagcaag
aagtggttttgtaatggccgtggaaacacatccggcagccacattgtaaaccacctggtg
agagcaaagtccaaggaggtgaccctacataaagatggccctctgggggaaacggtactg
gagtgttacaactgtggctgtcgtaatgtcttccttctgggctttatccctgccaaagct
gactcagtggtggtgttactatgccggcagccatgtgccagccagagcagtctgaaggac
atcaactgggacagctcccagtggcagcctctcatccaggaccgctgcttcctgtcctgg
ctggtgaaaattccttcagagcaggagcagctcagggctcgtcagataactgcccagcag
atcaacaagctggaggaactctggaaggaaaatcccactgcgaccctggaggacctggag
aagcctggtgtggatgaggagccccagcatgtgctgctccgctatgaggatgcctaccag
taccagaacattttcggccctctcgtcaagctggaggctgactacgataagaaacttaaa
gagtctcagactcaagacaacattactgtcagatgggacttgggcctgaataaaaagagg
attgcatatttcactcttcccaagacagactctgatatgcgactgatgcagggagatgaa
atttgcctgaggtacaaaggagacctggcccctccatggaaaggcattggacatgtcatc
aaagtccctgataactatggagatgagattgccatagagctaaggagcagtgccggggct
ccagtggagatcccccacaattttcaggtcgactttgtgtggaagtccacttcctttgac
aggatgcagagttcccttaagacgtttgccgtggatgagacttcagtgtcgggttacatc
taccacaaactgctgggacatgaagtagaggatgtggtcatcaagtgccagctccccaaa
cgcttcaccgctcaaggccttcctgatcttaaccactcacaggtgtatgctgtgaagaca
gtgctgcagcgtcctctcagtctgatccagggtcctccgggcacagggaagactgtaacc
tctgccaccatcgtctaccacctggccagacaaggcaacgggccggtgctggtgtgttct
cccagtaacattgccgtcgaccagctgacagagaagatccaccagacaggcctcaaggtg
gtgaggctgtgcgccaagagcagggaggctatcgactcgcctgtgtccttcctggctctg
cacaaccagacccgtaacatggacagtatgccagaacttcagaagctccaacagctgaag
gacgagactggagagctgtcctcctcagacgagaagcgctacagagctctgagacgtacc
gctgagagggagctgcttatgaatgccgatgtaatctgctctacttgcgttggggcgggg
gatcctcgcctggccaagatgcagttccgctcaatcctgattgatgagagcacccaggcc
accgaaccagagtgcatggtgcctgtcgtcctgggggcaaaacagttgattctggtgggt
gaccactgccagctaggccctgtggtgatgtgtaagaaggcagctaaagcaggtttgtca
cagtctctgtttgagcgtcttgtcgttttggggatccggccaattcgccttcaagttcag
tatcgcatgcacccggccctcagcgccttcccctccaacatcttctatgagggctctctg
cagaatggagtcactgccgcggaccgtgtgaagaaaggctttgacttccagtggccacag
cccgacaagcccatgttcttttatgtcacccaaggccaagaggaaattgccagctctgga
acttcctatctcaacaggactgaggcagccaatgtagagaaaataaccacaagattgcta
aaggctggagcaaaacccgatcagattggaatcattacgccctacgagggacagaggtcc
tacctggtccagtacatgcagttcagtggctcccttcataccaaactctaccaggaggtg
gaaatagccagtgtggatgcctttcaaggcagagagaaggacttcatcatcctgtcctgt
gtgagggccaatgagcaccagggcatcggcttcctcaatgatcccagacgtctcaatgtg
gcactcactagggccaggtatggtgtgattattgtgggaaaccccaaggccctgtccaag
cagcctctgtggaaccacctgttgaattactacaaggagcaaaaggttctggttgaaggc
cctcttaacaacctgagggagagcctcatgcaattcagcaagccccgcaagcttgtcaac
accatcaaccctggtggtcgattcatgagcacagccatgtatgatgccagggaggccctc
attcctggatctgtttatgaccgcagcagcaacggacgttcgtccaatatgtatttccag
acccatgaccagatcggtatgattggaacaggctccagcccgatgacttccctgaacatc
cccatccccttcaaccttgtgataccccccatccctccacctgggtacatggggcaggtc
aatggaccctcagcaggccgtggtgggggtataaaaagcaaggcaggcagtggaggaggc
agcgggatgcgaggagggcgtcaaagaaaccgcggcaacatggggaaccacagcggcgga
catggaggagcagaccgacatggaggccacatgagtggcagccaggccagccaggacctg
ggctcccagcccttctcccaggggcctttgacgcagagctacatgaacatgagccagccg
tctcaaatgagccagccagggctctcccagcctgaactctcccaggacagttacctagga
gatgagttcaagtcccagattgatgtggctttgtcccaggactccacctaccagggggaa
cgggcctaccaacacagcgtgactggactgtcccagtactag
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