Etheostoma cragini (Arkansas darter): 117953610
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Entry
117953610 CDS
T07493
Symbol
lig1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra03030
DNA replication
ecra03410
Base excision repair
ecra03420
Nucleotide excision repair
ecra03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
117953610 (lig1)
03410 Base excision repair
117953610 (lig1)
03420 Nucleotide excision repair
117953610 (lig1)
03430 Mismatch repair
117953610 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ecra03032
]
117953610 (lig1)
03400 DNA repair and recombination proteins [BR:
ecra03400
]
117953610 (lig1)
Enzymes [BR:
ecra01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
117953610 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
117953610 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
117953610 (lig1)
DNA replication proteins [BR:
ecra03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
117953610 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
117953610 (lig1)
DNA repair and recombination proteins [BR:
ecra03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
117953610 (lig1)
NER (nucleotide excision repair)
Other NER factors
117953610 (lig1)
MMR (mismatch excision repair)
Other MMR factors
117953610 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
117953610
NCBI-ProteinID:
XP_034742677
LinkDB
All DBs
Position
12:19867713..19926082
Genome browser
AA seq
1020 aa
AA seq
DB search
MQRSIASFFQPKSKDNKDVQKKSTDKPVKKPVKSPLKVQNGVHKADSPVTKKVAKRSRQI
LDSDDDDAPVIKEQVTTKGHGDKETICETEKKDAVFMAVPTPLSPSPALATPVTPATPAS
PASSASPGTPATPNSISPSGIVKRKTARKMFPKRKLDESRSGSESQKEEAEAKEEQDQQK
KRARMENSASSTGITDEPMEEDAKEERVEKAVAVANNPDEEEVKKNSEEQEKAKEEERLK
PTSFDEKEKIAEGAENEEKAKEKTEDDKGPAVAKKKKKKEAAAVEKDTQEGEGSPKSQTA
RQQKEGKEQKDKEPPKKAPISSFFAPRKAAVKTEKAEESEGEKKTSAERKPSAEDSKDTK
SESTAGQTDYDPSRPKYHPVDHACWKQGQKVPYLAVARTFEKIEEDSGRLKNIETLSNLL
RSVLLLSPDDLLCCVYLCLNQLGPAYLGMELGVGETVLMKAVAQATGRQLDKIKAEAQEK
GDLGLVAESSRSNQRMMFQPASLTAGGVFRKLKEIASMSGNSAMNKKIDIIKGLFVACRF
SEARYIVRSLAGKLRIGLAEQSVLSALSQAVCLTPPGQGLPPAVIDAGKGMSTESRRAWI
EEKSLILKQTYCEMPNYDVIIPVLLKDGIDELPNHCKLTPGVPLRPMLAHPTKGVGEVMK
RFDEAAFTCEYKYDGERAQIHILESGEVRVFSRNQEDNTSKYPDIISRIPKVKKDSVVSC
VLDSEAVAWDREKKQIQPFQVLTTRKRKDVDASEIKVQVCVYAFDLLYLNGESLVRQPLS
RRRALLKESFLEVEGEFVFARSIDSDNTDAIAEFLEQSVRDSCEGLMVKTLEKDATYEIA
KRSHNWLKLKKDYLDGVGDTVDLCVIGAYLGKGKRTGTYGGFLLACYDEDNEEFQSVCKI
GTGFKDEDLEQHYKFLKEHILPKPRAYYRIDQSAEPDVWLDAVQVWEVKCADLSLSPVYK
AAMGMVDPEKGISLRFPRFLRIRDDKKPEDATTGAQIADLYKKQQQIQNQGEKADPEDYY
NT seq
3063 nt
NT seq
+upstream
nt +downstream
nt
atgcagcggagcatcgcatccttctttcagcccaagagcaaggacaataaggatgttcag
aagaaatccacggataaaccagtgaaaaaacctgtgaaaagccctctcaaggtgcagaac
ggtgttcataaggctgattcacccgtcaccaagaaggttgccaaacgcagccgtcagatc
ctggatagcgacgatgacgacgctccggtcattaaagagcaagtcaccaccaagggacac
ggagacaaagaaactatttgtgaaacagaaaagaaggatgctgtctttatggcagttccc
acccccctgtctccatcacctgccctggccacccctgtaactcctgctactccagccagc
ccggcctcgtctgcttcacctgggacacccgccaccccaaactccatctccccctctggc
attgttaaacgcaagactgcgaggaagatgttccccaagaggaaactggatgagagcagg
agcggcagcgagagtcagaaagaggaagcagaggccaaggaggagcaggatcagcaaaaa
aaacgcgcacgcatggagaacagcgccagcagcacaggtatcacagatgagcccatggag
gaggacgcaaaggaagagagagttgaaaaggcagtagccgtggctaacaacccagatgag
gaggaggtgaagaagaatagtgaggaacaagagaaggccaaagaggaggagcggttgaag
ccaacaagctttgatgagaaggaaaaaatagctgagggggctgaaaatgaagagaaagca
aaggagaagaccgaggatgacaaagggcctgccgttgccaagaagaagaagaagaaggag
gcggcggcagttgaaaaggacacacaagagggagaagggagcccaaaaagtcaaacggca
agacagcagaaagaaggaaaagagcagaaagataaggagccacctaagaaagcacccatc
agcagtttctttgctccaagaaaagctgcagtgaagacggagaaagcagaggagagtgaa
ggggaaaaaaagacaagtgcagagaggaaaccctcagcagaggacagtaaagacacaaaa
agtgagtcaaccgccggacaaacagactacgatccgtccaggccaaaataccatcctgtg
gaccatgcctgctggaagcagggccaaaaagtgccgtacttggcggtggctcgcaccttt
gagaagattgaagaggactctggcaggctgaaaaacattgagacgctgtcgaacctgcta
cgctccgtgttgttgctctctccagatgacctgttgtgctgtgtgtacctgtgtttgaac
cagctgggtcctgcctacttggggatggagcttggtgttggagagacggttctaatgaaa
gctgttgctcaagcaactgggcgtcaattggacaaaatcaaggcagaggcgcaggagaag
ggagatttgggccttgtggccgagagttcccgtagcaaccagcgcatgatgtttcagccg
gccagtctgacagcagggggcgtgttcaggaaattgaaggaaattgccagcatgagtggg
aactcggccatgaataagaaaatcgacatcatcaaaggcctctttgtggcatgccgcttt
tccgaggcccgctacatagtcaggtccctggctgggaagctaaggataggcctggctgag
cagagtgtcctatctgcactgagccaggctgtgtgcctgaccccccctggacaaggttta
cctcctgctgtgatcgacgcagggaagggtatgagcactgagagcaggcgggcctggatc
gaagagaagagtctcattctcaaacagacttactgtgagatgcccaattacgacgtcatc
atccctgttctgctaaaagatggcatagacgagctacccaatcactgcaagctcactcca
ggtgtgccgttgagacccatgttggctcaccccaccaagggtgtcggcgaggtgatgaag
aggtttgacgaggcggccttcacctgcgagtacaaatacgatggagagcgagcacagatt
cacattctggagagtggcgaggtacgcgtattcagtcgcaaccaggaagacaacaccagc
aaataccctgatatcatctctcgcattcccaaggtaaagaaggactcagtggtgtcgtgc
gtcctggactcggaggcggtggcctgggatcgggagaagaaacagatccagcccttccag
gtcctcaccacccgcaagagaaaggacgtggatgcttctgagatcaaagtccaggtgtgc
gtgtacgcctttgacctgctctatctcaacggcgagtcgctggtgcgacagccgttgagt
cggcgtcgggctctgctgaaagaaagcttcttagaggtggagggagagtttgtgttcgcc
cgatccatcgactccgacaacaccgacgccatcgccgagttcctggagcagtctgtccga
gactcctgcgagggtctaatggtgaagactctggagaaggatgccacctatgaaatcgcc
aagcgctctcacaactggctcaagctgaagaaagactacctggacggagtgggcgacaca
gttgacctgtgtgtgattggcgcctacctgggaaaaggcaagaggacgggcacctacggg
ggcttcctgctggcctgctacgatgaggacaatgaggagttccagtcagtctgcaagatc
gggacaggctttaaggatgaagatctggagcagcattacaagttcctaaaggagcacatt
ctgcccaagccccgtgcctactaccgcatcgaccaatcagcagagcccgatgtgtggctg
gatgccgtgcaggtgtgggaggtgaagtgcgccgacctgtcgctgtcgcccgtctacaag
gccgctatgggaatggtggatccagaaaaaggcatttctctgaggttccctcgcttcctt
cggatcagagacgacaagaagcctgaggatgccacgaccggagctcagattgctgatttg
tacaagaagcagcagcagattcagaaccagggtgagaaagctgacccagaggactactac
tga
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