Edaphobacter sp. 12200R-103: GWR55_08135
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Entry
GWR55_08135 CDS
T06408
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
eda
Edaphobacter sp. 12200R-103
Pathway
eda03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
eda00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
GWR55_08135 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
eda03400
]
GWR55_08135 (ligD)
Enzymes [BR:
eda01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
GWR55_08135 (ligD)
DNA repair and recombination proteins [BR:
eda03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
GWR55_08135 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
QHS51712
UniProt:
A0A6B9YPK4
LinkDB
All DBs
Position
1951471..1954215
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AA seq
914 aa
AA seq
DB search
MAGSKKAASKRSSKTARKTTAARKKRTIKTSSAPDAVDEQLARYRSMRDFTITEEPSGGH
ARKEPREGLPFCVQKHAASHLHYDFRLGWNGVLKSWAVTKGPSYFTGDKRLAVQVEDHPM
EYGGFEGIIPQGQYGGGTVMLWDQGRWEPQAGHTDVDAGLRDGSLKFILHGQKLKGKWAL
IRMGGKWQREKKPNWLLIKEHDEFEHSEKEAPVTETEPDSVITGRSIEEIARNEDHVWNS
KDTRSGAKAWFRQEPRETKSQTRARVSDKELQKEIKDLPSERQPSFTEPQLATMVEIPPS
GSDWLHELKLDGYRIQARKDGSKVQMLTRKGLDWTARMRRIADEIAQLPADKATLDGELV
VVAPNGTTSFADLQASMQEGTKNELTYFAFDLLHLDGKNTRNLPLKERKELLRSVLEGSN
EERVRLSEHIESGGVELLREACKLQAEGIISKRAAGKYVSGRGRDWLKAKCLHEQEFVVG
GFTLPANGIHGVGALLLGYYKGGRLIYAGRTGTGFTQKTHRTVRDRLDDLEANLSPFASL
PGDARKDAHWVKPEMVVQVRFATWTADDLVRQAAFLGIREDKPAAEVTREEPAASFGPRK
SRSKVAEQDSRARVVANSSDEIRAAVGKHAPVRLTHPDKVLDQISGLTKQMLADYYWAVA
DQMLPHIADRPLSLVRCPEGAGKPCFFQKHVNAMLPEGISGIDIADKKGKVEPYITLNTA
EALAGLAQMGVLEVHPWGSRNEDLEHPDRLIFDLDPDETLPWKEIVDSAMEVKDLLKQLG
LESFVKTTGGKGLHIVAPIEPKYGWPEIKEVARQIVMSMESAAPDRYLTKMTKTARKGKI
YLDYLRNERGATSVAPYSPRARVGAAVSMPLNWSELKKMKERPSFSVAHFPEWKGRLKKD
PWMKMNEVKQGLKL
NT seq
2745 nt
NT seq
+upstream
nt +downstream
nt
atggcgggttcgaagaaggcagccagcaagcgatcgagcaagacggccaggaagactacg
gctgcacgcaagaagcgcacgatcaaaaccagttctgcacccgatgcggtggacgagcaa
ctggcacgctaccggtcgatgcgcgacttcaccattacggaagagccgagcggaggccat
gcgcgtaaggagccccgcgaggggcttcccttctgcgtgcagaagcatgcggcctcgcat
cttcactacgacttcaggctgggatggaacggcgttctgaagagctgggcggtaacgaag
gggcccagctactttaccggcgataagcggctggccgtccaggtcgaagatcacccgatg
gaatatggaggattcgaggggatcattccgcaaggccagtacggtggtggcaccgtgatg
ttgtgggaccagggcagatgggagccgcaggccggtcacaccgacgtagatgccggcctg
cgggatggcagcctcaagttcatcctgcacggtcagaagctgaagggaaaatgggcactg
atccggatgggcggaaagtggcagagagagaagaagcccaactggctgctgattaaagag
catgatgagttcgagcacagcgagaaggaagctcccgtaaccgagactgaacctgacagc
gtcatcaccggccggtcgatcgaagagatcgctcgtaacgaagatcatgtgtggaactca
aaggatacgcgttccggggcgaaggcctggtttcgacaggaacctcgtgagacgaaatcc
caaacgcgtgcgcgggtgagtgacaaagagctgcagaaagagatcaaggatcttccgagc
gagcgccagccttctttcaccgagccccagcttgcaacgatggtagagatacctccatcg
ggttcagactggctgcatgagctgaagctggatgggtaccggattcaggcacgcaaggac
ggaagcaaggtccagatgctgaccaggaaaggactggactggaccgcgcgtatgcgcagg
atcgcagatgagattgcgcaactgccagccgataaagcaacgctggatggagaactggta
gttgttgcgccgaacggtacaaccagctttgcggatctgcaggcatcgatgcaggaaggg
acaaagaatgagctgacgtacttcgctttcgatcttctgcatctggatggaaagaatacg
cgcaatcttccgttgaaggagcgcaaagaactattgcggtcggtgcttgagggctcaaac
gaagagcgggtacgactgagtgagcacatcgagagtggaggagtcgagttgctgagggag
gcctgcaaactgcaggcggagggaatcatctcgaagcgagcggcaggcaaatacgtctcc
ggacgtggacgtgactggctgaaggcaaagtgcctacatgaacaggagtttgtcgtggga
ggctttacgcttccggcgaatggtattcacggcgtgggcgcactgctgctggggtattac
aaaggcggaaggctgatttatgcggggcgaaccggaacgggtttcacacaaaagacgcat
cggacggtgcgggacaggctggatgatctagaggccaatttgtctccatttgcttcgctg
cccggtgacgcgcgcaaggatgcgcactgggtcaaacccgagatggtcgtgcaggtaaga
tttgcaacatggaccgcagatgatctggtgcggcaggcggcgtttctgggcataagagag
gacaagcctgctgctgaggtgacacgcgaagagccagcggcatcttttggtccaagaaag
tctcggagtaaagtggctgaacaagacagccgcgcgcgcgttgtggcgaattcttccgac
gagatccgggctgcggtgggaaagcatgcgccagttcggctgacacatccggataaggtt
ctcgatcagatttcgggactgaccaagcagatgctggctgactactactgggctgtagca
gaccagatgctgccgcatatcgcggaccgcccactgagcctggtgcgttgtccggaggga
gcaggcaagccatgcttttttcagaagcatgtgaatgcgatgcttcctgagggaatcagc
ggaatcgatattgccgacaagaagggcaaggtagagccctacatcacgttgaatacagcc
gaagcccttgccgggctggcacagatgggggtactggaggtgcatccatggggatcgcgc
aacgaagatcttgagcatcctgaccggctgatcttcgatcttgaccccgacgagaccttg
ccgtggaaagagatcgtagattcagcgatggaggtgaaggatctgctgaaacaactggga
ctcgaaagcttcgtcaagacgacgggaggaaaggggttgcacattgtcgctcccattgag
ccaaagtacggctggccggagatcaaggaagtggcgagacagatcgtgatgtccatggag
agtgcagcacccgatcgttacctgacaaagatgacaaagactgcacgaaagggaaagatc
tacctggactatctgcggaatgaacgtggcgccacctccgtggctccgtattctccccgc
gcgcgtgtaggagcggcggtatccatgcctctgaactggagcgagctgaaaaagatgaag
gagaggccgtcgttcagcgtggctcactttccggagtggaaggggcggctgaagaaagat
ccatggatgaagatgaatgaggtgaagcaggggctgaagctgtag
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