KEGG   Edaphobacter sp. 12200R-103: GWR55_08135
Entry
GWR55_08135       CDS       T06408                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
eda  Edaphobacter sp. 12200R-103
Pathway
eda03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:eda00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    GWR55_08135 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:eda03400]
    GWR55_08135 (ligD)
Enzymes [BR:eda01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     GWR55_08135 (ligD)
DNA repair and recombination proteins [BR:eda03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     GWR55_08135 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase mRNA_cap_enzyme
Other DBs
NCBI-ProteinID: QHS51712
UniProt: A0A6B9YPK4
LinkDB
Position
1951471..1954215
AA seq 914 aa
MAGSKKAASKRSSKTARKTTAARKKRTIKTSSAPDAVDEQLARYRSMRDFTITEEPSGGH
ARKEPREGLPFCVQKHAASHLHYDFRLGWNGVLKSWAVTKGPSYFTGDKRLAVQVEDHPM
EYGGFEGIIPQGQYGGGTVMLWDQGRWEPQAGHTDVDAGLRDGSLKFILHGQKLKGKWAL
IRMGGKWQREKKPNWLLIKEHDEFEHSEKEAPVTETEPDSVITGRSIEEIARNEDHVWNS
KDTRSGAKAWFRQEPRETKSQTRARVSDKELQKEIKDLPSERQPSFTEPQLATMVEIPPS
GSDWLHELKLDGYRIQARKDGSKVQMLTRKGLDWTARMRRIADEIAQLPADKATLDGELV
VVAPNGTTSFADLQASMQEGTKNELTYFAFDLLHLDGKNTRNLPLKERKELLRSVLEGSN
EERVRLSEHIESGGVELLREACKLQAEGIISKRAAGKYVSGRGRDWLKAKCLHEQEFVVG
GFTLPANGIHGVGALLLGYYKGGRLIYAGRTGTGFTQKTHRTVRDRLDDLEANLSPFASL
PGDARKDAHWVKPEMVVQVRFATWTADDLVRQAAFLGIREDKPAAEVTREEPAASFGPRK
SRSKVAEQDSRARVVANSSDEIRAAVGKHAPVRLTHPDKVLDQISGLTKQMLADYYWAVA
DQMLPHIADRPLSLVRCPEGAGKPCFFQKHVNAMLPEGISGIDIADKKGKVEPYITLNTA
EALAGLAQMGVLEVHPWGSRNEDLEHPDRLIFDLDPDETLPWKEIVDSAMEVKDLLKQLG
LESFVKTTGGKGLHIVAPIEPKYGWPEIKEVARQIVMSMESAAPDRYLTKMTKTARKGKI
YLDYLRNERGATSVAPYSPRARVGAAVSMPLNWSELKKMKERPSFSVAHFPEWKGRLKKD
PWMKMNEVKQGLKL
NT seq 2745 nt   +upstreamnt  +downstreamnt
atggcgggttcgaagaaggcagccagcaagcgatcgagcaagacggccaggaagactacg
gctgcacgcaagaagcgcacgatcaaaaccagttctgcacccgatgcggtggacgagcaa
ctggcacgctaccggtcgatgcgcgacttcaccattacggaagagccgagcggaggccat
gcgcgtaaggagccccgcgaggggcttcccttctgcgtgcagaagcatgcggcctcgcat
cttcactacgacttcaggctgggatggaacggcgttctgaagagctgggcggtaacgaag
gggcccagctactttaccggcgataagcggctggccgtccaggtcgaagatcacccgatg
gaatatggaggattcgaggggatcattccgcaaggccagtacggtggtggcaccgtgatg
ttgtgggaccagggcagatgggagccgcaggccggtcacaccgacgtagatgccggcctg
cgggatggcagcctcaagttcatcctgcacggtcagaagctgaagggaaaatgggcactg
atccggatgggcggaaagtggcagagagagaagaagcccaactggctgctgattaaagag
catgatgagttcgagcacagcgagaaggaagctcccgtaaccgagactgaacctgacagc
gtcatcaccggccggtcgatcgaagagatcgctcgtaacgaagatcatgtgtggaactca
aaggatacgcgttccggggcgaaggcctggtttcgacaggaacctcgtgagacgaaatcc
caaacgcgtgcgcgggtgagtgacaaagagctgcagaaagagatcaaggatcttccgagc
gagcgccagccttctttcaccgagccccagcttgcaacgatggtagagatacctccatcg
ggttcagactggctgcatgagctgaagctggatgggtaccggattcaggcacgcaaggac
ggaagcaaggtccagatgctgaccaggaaaggactggactggaccgcgcgtatgcgcagg
atcgcagatgagattgcgcaactgccagccgataaagcaacgctggatggagaactggta
gttgttgcgccgaacggtacaaccagctttgcggatctgcaggcatcgatgcaggaaggg
acaaagaatgagctgacgtacttcgctttcgatcttctgcatctggatggaaagaatacg
cgcaatcttccgttgaaggagcgcaaagaactattgcggtcggtgcttgagggctcaaac
gaagagcgggtacgactgagtgagcacatcgagagtggaggagtcgagttgctgagggag
gcctgcaaactgcaggcggagggaatcatctcgaagcgagcggcaggcaaatacgtctcc
ggacgtggacgtgactggctgaaggcaaagtgcctacatgaacaggagtttgtcgtggga
ggctttacgcttccggcgaatggtattcacggcgtgggcgcactgctgctggggtattac
aaaggcggaaggctgatttatgcggggcgaaccggaacgggtttcacacaaaagacgcat
cggacggtgcgggacaggctggatgatctagaggccaatttgtctccatttgcttcgctg
cccggtgacgcgcgcaaggatgcgcactgggtcaaacccgagatggtcgtgcaggtaaga
tttgcaacatggaccgcagatgatctggtgcggcaggcggcgtttctgggcataagagag
gacaagcctgctgctgaggtgacacgcgaagagccagcggcatcttttggtccaagaaag
tctcggagtaaagtggctgaacaagacagccgcgcgcgcgttgtggcgaattcttccgac
gagatccgggctgcggtgggaaagcatgcgccagttcggctgacacatccggataaggtt
ctcgatcagatttcgggactgaccaagcagatgctggctgactactactgggctgtagca
gaccagatgctgccgcatatcgcggaccgcccactgagcctggtgcgttgtccggaggga
gcaggcaagccatgcttttttcagaagcatgtgaatgcgatgcttcctgagggaatcagc
ggaatcgatattgccgacaagaagggcaaggtagagccctacatcacgttgaatacagcc
gaagcccttgccgggctggcacagatgggggtactggaggtgcatccatggggatcgcgc
aacgaagatcttgagcatcctgaccggctgatcttcgatcttgaccccgacgagaccttg
ccgtggaaagagatcgtagattcagcgatggaggtgaaggatctgctgaaacaactggga
ctcgaaagcttcgtcaagacgacgggaggaaaggggttgcacattgtcgctcccattgag
ccaaagtacggctggccggagatcaaggaagtggcgagacagatcgtgatgtccatggag
agtgcagcacccgatcgttacctgacaaagatgacaaagactgcacgaaagggaaagatc
tacctggactatctgcggaatgaacgtggcgccacctccgtggctccgtattctccccgc
gcgcgtgtaggagcggcggtatccatgcctctgaactggagcgagctgaaaaagatgaag
gagaggccgtcgttcagcgtggctcactttccggagtggaaggggcggctgaagaaagat
ccatggatgaagatgaatgaggtgaagcaggggctgaagctgtag

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