Edaphobacter sp. 12200R-103: GWR55_17370
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Entry
GWR55_17370 CDS
T06408
Name
(GenBank) oligogalacturonate lyase
KO
K01730
oligogalacturonide lyase [EC:
4.2.2.6
]
Organism
eda
Edaphobacter sp. 12200R-103
Pathway
eda00040
Pentose and glucuronate interconversions
eda01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
eda00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
GWR55_17370
Enzymes [BR:
eda01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.6 oligogalacturonide lyase
GWR55_17370
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase22
PD40
Motif
Other DBs
NCBI-ProteinID:
QHS53973
UniProt:
A0A6B9YYR1
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Position
4201061..4202443
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AA seq
460 aa
AA seq
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MKSRMRFSVAALVLAGCAVWAGGQPIPKTWVDRDTGHRIYRVTDEPGSSGFYFNVNAYSP
DGSIMVYTAPDGIHTMELATRNTHLLVPNPKVGEGVSPQERMRGGNHAIVVGRKTNSVFF
TRMDASTHLQTVFKADLISGKVTRLATLPPRARISTVNADETLGAGVYTETEAGAAQEYG
ANSPRRGPLVQPEGKGAMMERRLAARIPVVLFTIDLKTGKVKELFHSTDWIGHLLFSPVD
PTLLMYCHEGPWHKVDRIWTIRTDGTHNELRHKRTMLMEIAGHEFWGQDGKTVWYDWQLP
KGEDFWLAGFDISTNKRVAYHLQRDEWSIHFNVNKGATLFCGDGGDPGQVAHSQNGEWIN
LFHPEWRQNDNSLEELNFWKPGVFHREKLVNMTHHNYRLEPNVRFSPDNKLIFFTSNMFG
PSYVFAVEVAKAAPGANDVESTPELAAKYAPAPTATPADK
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atgaagagcaggatgagattctccgtggcggcattggtattggctggctgtgcagtgtgg
gctggaggtcagccgattccgaagacatgggtggatcgcgatacgggacatcgcatctac
cgcgtgacggacgagccgggatcgtcgggcttttacttcaacgtaaatgcatattctcca
gacggcagcatcatggtctatacggcgccggatggaattcacacgatggagctggccacg
cgcaacacgcacctgctggtgccaaatccgaaggtgggggagggggtatctccgcaggag
aggatgcgcggtggcaatcatgccatcgtggtgggtcgcaagacgaatagtgtcttcttt
acgcgcatggatgcttcgacgcatctgcagacggtcttcaaggccgacctgatctcgggt
aaggtcaccaggctggccacgcttcctccacgagcacgtatttcgacggtcaatgcggac
gagactttaggagcaggtgtctatacggagactgaagccggcgcggcgcaggagtacgga
gcaaactcaccgaggcgcggtcccctggttcagccggagggcaagggcgcgatgatggag
cgaaggctcgcagcgaggattccggtcgtgctgttcacgatcgacctgaagacgggcaag
gtgaaggagctgtttcattcgaccgactggatcggtcacctgctgttttcgcctgttgat
cctacgctgctgatgtactgtcacgaggggccatggcacaaggtggatcgcatctggacg
atccgcacggacggcacgcataacgagttgcgccacaagcgcaccatgctgatggagatt
gccgggcacgagttctggggacaggatggcaagacggtttggtacgactggcagcttccg
aagggtgaggacttttggctggcgggcttcgatatctcgaccaacaagcgcgtggcgtat
cacctgcagcgcgatgagtggtcgattcacttcaacgtgaacaagggtgcgacgttgttc
tgtggagacggaggcgatccggggcaggtggcgcactcgcagaacggcgagtggatcaat
ctatttcatccggagtggagacagaatgacaacagcctggaggaactgaacttctggaag
cctggcgtgttccatcgcgagaagttggtgaacatgacgcatcacaactatcggctggag
ccgaatgtgcgcttctcgccggacaacaagttgatcttcttcacctcaaacatgtttgga
ccgagctatgtctttgcggtggaggtggcaaaggctgctcccggcgcgaacgatgtcgaa
tccacccctgagctggctgcgaagtatgctccagctcctacagcgaccccagccgacaaa
tag
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