KEGG   Edaphobacter sp. 4G125: H7846_11495
Entry
H7846_11495       CDS       T08591                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
edg  Edaphobacter sp. 4G125
Brite
KEGG Orthology (KO) [BR:edg00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    H7846_11495 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:edg03400]
    H7846_11495 (ligD)
Enzymes [BR:edg01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     H7846_11495 (ligD)
DNA repair and recombination proteins [BR:edg03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     H7846_11495 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase mRNA_cap_enzyme
Other DBs
NCBI-ProteinID: QNI38587
UniProt: A0A7G8C1B7
LinkDB
Position
2750441..2753179
AA seq 912 aa
MAGSRKTALKKATKSAAKKKLYIQQNDAADAVDEQLARYRSMRDFNITSEPSGKDSDSTS
VEGLPFCIQKHAASHLHYDFRLGWNGVLKSWAIAKGPSYFTGDKRLAVQVEDHPLEYGGF
EGIIPKGQYGGGTVMLWDQGTWDPQPGYTDVNAGLRDGSLKFILHGAKLQGKWALIRMGG
KWAKEKKPNWLLIKEHDEFERKQDETPITESEPDSVVTGRSIEEIANSGDHVWNSKDTRS
GEKAWFRKEPTKGATKRIPSSFQQRLKEIPKEKQPEFLPPQLASMKEVPPSGVGWLHELK
LDGYRIQARKDGDRVQMLTRKGLDWTHRMQTTANEIAKLAVDQATLDGELVVLKPNGTTS
FADLQISLQEGAQHTVTYFAFDLLHLEGKNTRDLPLKERKALLSDLLVDINQDLLRLSEH
IETEDARALLHKACELQAEGLLSKNANGRYISGRSSDWIKTKCLHEQEFVIGGYTLPSND
IRGVGALLLGYYDRGKLIYAGRAGTGFNHKTHKLVRDCLEELAQEKSPFASLPGDARKDA
LWVRPEMVAQVRFATWTADNLIRQAAFLGLREDKPAKEVVREEPDTSIGPKRARGRHLHS
PQGEVEVPSRKTTEKKDVEGNEHASIRLTHPEKILDEASGMTKQILADYYWAIAEWMLPQ
IEGRPVSLVRCPEGSGKPCFFQKHVNSMLPKGIGSVDIADKKGKVEPYITLNTVEALAGL
AQLGVLEVHPWGSRNEDLEHPDRLIFDLDPDEELDWSEIVDAAFELRRGLKKLKIESFVK
TTGGKGLHIIAPIKAEHTWPEVKEFARKFALVMEKNAPQRYLTKMTKAARRGKIYLDYLR
NERGATSVAAYSPRARIGAPVSMPLLWTELQKSTERPVFRVAELAEWKSRLKQDPWKDLS
KIKQQLQLGLVD
NT seq 2739 nt   +upstreamnt  +downstreamnt
atggcgggttcgagaaagacagccttaaaaaaggcgaccaagtctgcagcgaagaagaaa
ttatatatccaacagaacgatgcggcagatgctgtggatgagcagcttgcacgctatcgt
tccatgcgcgacttcaatatcacctcggaacccagtggcaaggatagcgatagtacctct
gtcgaaggacttcccttctgcatacaaaagcatgctgcctcgcatctgcattacgacttt
cggctggggtggaatggtgttttgaaaagctgggccatcgccaaaggacctagctatttc
accggagacaaacggctggccgtacaggtggaagatcatcctctggaatacggagggttc
gaaggaatcatcccgaagggtcagtatggcggcggaacagtaatgttgtgggaccaggga
acatgggacccacagcctggatataccgatgtcaacgcaggattgagagatggaagtctg
aagtttattttgcatggggcaaagcttcaggggaaatgggctttgatccgcatgggaggt
aaatgggcaaaagagaaaaagcccaactggctgctgatcaaagaacatgatgaattcgag
agaaaacaggatgaaacaccgattacagaatcagaaccagacagcgttgtgaccggacgc
tccattgaagagattgccaacagtggagatcatgtctggaactcaaaggatactcgctcg
ggagaaaaggcgtggtttcgcaaggaaccaacaaaaggcgctacgaaacgcataccgtcg
agctttcaacaacggcttaaggaaattccgaaagaaaagcagcctgagtttctgccgcct
caactagcgtccatgaaagaggtgccaccgtcaggagttggctggctgcacgagttgaag
ttggacggatacaggattcaagcgcgcaaggatggcgatcgcgtacagatgttgactcga
aaggggctggactggacacatcgaatgcagacgacggcaaatgaaatcgcaaagcttgcg
gtcgatcaagcaactttagatggagagcttgtcgttctcaagccaaatggaacgacgagc
tttgctgatctgcaaatttcactgcaagagggagctcaacatacagttacttactttgca
tttgatctattgcacttggagggtaaaaacacacgcgatctccccctcaaagaacgcaag
gctttgttaagtgaccttctggttgacatcaatcaggacctgctgcggctcagcgagcac
atcgaaaccgaggatgccagagcactgttacacaaggcgtgcgaattacaagctgagggg
ctcctttcaaagaacgcgaacggacgatatatttctggtcgcagcagtgactggatcaaa
acaaagtgtctgcacgaacaagagtttgtgattggaggttacactcttccctcaaatgat
attcgcggcgtaggtgcgctgctattgggttactacgatcgggggaagttgatttacgca
ggacgcgctggaactggattcaaccataagacccacaagctggtacgcgattgtctggaa
gaattagcgcaagaaaagagccctttcgctagcctgccaggagatgcacgaaaggacgca
ctttgggtaagaccagagatggtagctcaagtgcggttcgcgacatggacagcagacaat
ctgattcggcaagcagcctttcttggattacgagaagacaaacccgctaaagaagttgta
cgcgaagagcctgatacatccatcggccccaagcgggcaagagggcggcacctgcattct
ccgcaaggagaagttgaggtaccaagcagaaagacaactgagaaaaaagatgttgagggt
aacgaacatgcatcgatacgtttgactcacccggaaaaaatattggatgaagcatcgggc
atgacaaaacagatacttgcagattattactgggcgattgcggaatggatgcttcctcag
attgagggtcgtcctgtgagcctggtgaggtgtcctgaaggctcaggaaagccttgtttc
tttcagaaacatgtgaactccatgcttccgaaggggatcggcagcgtcgatattgcagat
aagaagggaaaggtagaaccctatatcaccctaaataccgtcgaggctctagccggactg
gctcaattgggggtccttgaggtgcatccatggggatcgcgcaatgaagatctggaacat
ccagaccgattgatcttcgatctcgatcccgatgaggaactggattggtcggagattgtt
gatgccgcatttgaacttcgaagaggattaaagaagctcaagatcgaaagctttgtaaag
accactggaggcaaaggactacatatcattgcgccgatcaaagcagagcatacatggcca
gaagtcaaggagttcgcgcgtaaatttgcactcgtcatggagaaaaatgcgccacaacga
tatctgacgaagatgaccaaggcagcgcggcgagggaaaatctatctggattatctgaga
aatgagcgtggtgctacttcagttgcggcttattcgcctcgcgcgcgaattggcgctcct
gtttcaatgcccctactctggactgagttacagaagtcgacagaaaggcccgtctttcgc
gttgccgaattagcagaatggaagtcccgattgaagcaagatccctggaaggatctttcg
aaaatcaaacagcaattacagttgggtctcgtcgattaa

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