Edaphobacter sp. 4G125: H7846_11495
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Entry
H7846_11495 CDS
T08591
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
edg
Edaphobacter sp. 4G125
Brite
KEGG Orthology (KO) [BR:
edg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
H7846_11495 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
edg03400
]
H7846_11495 (ligD)
Enzymes [BR:
edg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
H7846_11495 (ligD)
DNA repair and recombination proteins [BR:
edg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
H7846_11495 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
QNI38587
UniProt:
A0A7G8C1B7
LinkDB
All DBs
Position
2750441..2753179
Genome browser
AA seq
912 aa
AA seq
DB search
MAGSRKTALKKATKSAAKKKLYIQQNDAADAVDEQLARYRSMRDFNITSEPSGKDSDSTS
VEGLPFCIQKHAASHLHYDFRLGWNGVLKSWAIAKGPSYFTGDKRLAVQVEDHPLEYGGF
EGIIPKGQYGGGTVMLWDQGTWDPQPGYTDVNAGLRDGSLKFILHGAKLQGKWALIRMGG
KWAKEKKPNWLLIKEHDEFERKQDETPITESEPDSVVTGRSIEEIANSGDHVWNSKDTRS
GEKAWFRKEPTKGATKRIPSSFQQRLKEIPKEKQPEFLPPQLASMKEVPPSGVGWLHELK
LDGYRIQARKDGDRVQMLTRKGLDWTHRMQTTANEIAKLAVDQATLDGELVVLKPNGTTS
FADLQISLQEGAQHTVTYFAFDLLHLEGKNTRDLPLKERKALLSDLLVDINQDLLRLSEH
IETEDARALLHKACELQAEGLLSKNANGRYISGRSSDWIKTKCLHEQEFVIGGYTLPSND
IRGVGALLLGYYDRGKLIYAGRAGTGFNHKTHKLVRDCLEELAQEKSPFASLPGDARKDA
LWVRPEMVAQVRFATWTADNLIRQAAFLGLREDKPAKEVVREEPDTSIGPKRARGRHLHS
PQGEVEVPSRKTTEKKDVEGNEHASIRLTHPEKILDEASGMTKQILADYYWAIAEWMLPQ
IEGRPVSLVRCPEGSGKPCFFQKHVNSMLPKGIGSVDIADKKGKVEPYITLNTVEALAGL
AQLGVLEVHPWGSRNEDLEHPDRLIFDLDPDEELDWSEIVDAAFELRRGLKKLKIESFVK
TTGGKGLHIIAPIKAEHTWPEVKEFARKFALVMEKNAPQRYLTKMTKAARRGKIYLDYLR
NERGATSVAAYSPRARIGAPVSMPLLWTELQKSTERPVFRVAELAEWKSRLKQDPWKDLS
KIKQQLQLGLVD
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atggcgggttcgagaaagacagccttaaaaaaggcgaccaagtctgcagcgaagaagaaa
ttatatatccaacagaacgatgcggcagatgctgtggatgagcagcttgcacgctatcgt
tccatgcgcgacttcaatatcacctcggaacccagtggcaaggatagcgatagtacctct
gtcgaaggacttcccttctgcatacaaaagcatgctgcctcgcatctgcattacgacttt
cggctggggtggaatggtgttttgaaaagctgggccatcgccaaaggacctagctatttc
accggagacaaacggctggccgtacaggtggaagatcatcctctggaatacggagggttc
gaaggaatcatcccgaagggtcagtatggcggcggaacagtaatgttgtgggaccaggga
acatgggacccacagcctggatataccgatgtcaacgcaggattgagagatggaagtctg
aagtttattttgcatggggcaaagcttcaggggaaatgggctttgatccgcatgggaggt
aaatgggcaaaagagaaaaagcccaactggctgctgatcaaagaacatgatgaattcgag
agaaaacaggatgaaacaccgattacagaatcagaaccagacagcgttgtgaccggacgc
tccattgaagagattgccaacagtggagatcatgtctggaactcaaaggatactcgctcg
ggagaaaaggcgtggtttcgcaaggaaccaacaaaaggcgctacgaaacgcataccgtcg
agctttcaacaacggcttaaggaaattccgaaagaaaagcagcctgagtttctgccgcct
caactagcgtccatgaaagaggtgccaccgtcaggagttggctggctgcacgagttgaag
ttggacggatacaggattcaagcgcgcaaggatggcgatcgcgtacagatgttgactcga
aaggggctggactggacacatcgaatgcagacgacggcaaatgaaatcgcaaagcttgcg
gtcgatcaagcaactttagatggagagcttgtcgttctcaagccaaatggaacgacgagc
tttgctgatctgcaaatttcactgcaagagggagctcaacatacagttacttactttgca
tttgatctattgcacttggagggtaaaaacacacgcgatctccccctcaaagaacgcaag
gctttgttaagtgaccttctggttgacatcaatcaggacctgctgcggctcagcgagcac
atcgaaaccgaggatgccagagcactgttacacaaggcgtgcgaattacaagctgagggg
ctcctttcaaagaacgcgaacggacgatatatttctggtcgcagcagtgactggatcaaa
acaaagtgtctgcacgaacaagagtttgtgattggaggttacactcttccctcaaatgat
attcgcggcgtaggtgcgctgctattgggttactacgatcgggggaagttgatttacgca
ggacgcgctggaactggattcaaccataagacccacaagctggtacgcgattgtctggaa
gaattagcgcaagaaaagagccctttcgctagcctgccaggagatgcacgaaaggacgca
ctttgggtaagaccagagatggtagctcaagtgcggttcgcgacatggacagcagacaat
ctgattcggcaagcagcctttcttggattacgagaagacaaacccgctaaagaagttgta
cgcgaagagcctgatacatccatcggccccaagcgggcaagagggcggcacctgcattct
ccgcaaggagaagttgaggtaccaagcagaaagacaactgagaaaaaagatgttgagggt
aacgaacatgcatcgatacgtttgactcacccggaaaaaatattggatgaagcatcgggc
atgacaaaacagatacttgcagattattactgggcgattgcggaatggatgcttcctcag
attgagggtcgtcctgtgagcctggtgaggtgtcctgaaggctcaggaaagccttgtttc
tttcagaaacatgtgaactccatgcttccgaaggggatcggcagcgtcgatattgcagat
aagaagggaaaggtagaaccctatatcaccctaaataccgtcgaggctctagccggactg
gctcaattgggggtccttgaggtgcatccatggggatcgcgcaatgaagatctggaacat
ccagaccgattgatcttcgatctcgatcccgatgaggaactggattggtcggagattgtt
gatgccgcatttgaacttcgaagaggattaaagaagctcaagatcgaaagctttgtaaag
accactggaggcaaaggactacatatcattgcgccgatcaaagcagagcatacatggcca
gaagtcaaggagttcgcgcgtaaatttgcactcgtcatggagaaaaatgcgccacaacga
tatctgacgaagatgaccaaggcagcgcggcgagggaaaatctatctggattatctgaga
aatgagcgtggtgctacttcagttgcggcttattcgcctcgcgcgcgaattggcgctcct
gtttcaatgcccctactctggactgagttacagaagtcgacagaaaggcccgtctttcgc
gttgccgaattagcagaatggaagtcccgattgaagcaagatccctggaaggatctttcg
aaaatcaaacagcaattacagttgggtctcgtcgattaa
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