Edwardsiella sp. LADL05-105: AAZ33_10980
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Entry
AAZ33_10980 CDS
T04005
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
edl
Edwardsiella sp. LADL05-105
Pathway
edl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
edl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AAZ33_10980 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
edl03400
]
AAZ33_10980 (mfd)
Enzymes [BR:
edl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AAZ33_10980 (mfd)
DNA repair and recombination proteins [BR:
edl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AAZ33_10980 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
MFD_D3
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
UBU94585
LinkDB
All DBs
Position
2462204..2465665
Genome browser
AA seq
1153 aa
AA seq
DB search
MSEQYRLTLPERYPLPARAGDVRQLGQLSGSACALECAEIAERHAGPVMLVVPDMQTALR
LRDEIPQFSRQWVTTLADWETLPYDSFSPHQDIISARLSCLYHLPGMERGIIILPINTLM
QRVCPHSFLHGHALVMKKGQRLARDVLRAQLEQAGYRSVDQVMEHGEFATRGALLDLFPM
GSDEPYRIDFFDDEIDSLRLFDVDSQRTLNEVERIDLLPAHEFPTDQTAIELFRSQWREH
FEVRRDAEHIYQQVSKRIWPAGIEYWQPLFFNQPLPTLFSYLPAGTLLLGLGDLHQAAER
FWQDIEQRRASRGIDPMRPLLPPESLWMRVDELFAALKQWPRIQLTRDALDDHAGHTNLH
YQPLPTLAVEAQSKKPLANLQRFLAEFSGSVVFSAESEGRRETLLELLARIQVAPRLIAR
LEEAEPGGRYIMVGASEHGFINAPLALALICESDLLGERVSRRRQDSRRTINTDTLIRNL
AELTPGQPVVHLEHGVGRYGGMTTLEAGGIKGEYLILSYAGDAKLYVPVSSLHLLSRYAG
GADDSAPLHRLGGDAWSRARQKAAEKVRDVAAELLDIYAMRAAKAGFAFRHDREAYQLFC
QGFPFETTADQEIAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVHSGKQVAV
LVPTTLLAQQHYDNFRDRFANWPVRIELISRFRSAKEQAQVLADTADGKVDILIGTHKLL
QGDVQWRDLGLLIVDEEHRFGVRQKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLS
IIATPPARRMAVKTFVREYDSLVVREAILRETLRGGQVYYLYNDVDTIQKAADRLATLVP
EARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHFGLA
QLHQLRGRVGRSYHQAYAYLLTPPPKAMTVDAQKRLEAIASLEDLGAGFALATHDLEIRG
AGELLGDDQSGQMASVGFSLYMELLESAVTALKEGREPSLEDLTSQQTEVELRMPTLLPE
EMIPDVGTRLSFYKRIASAGDGDTLADLRAELIDRFGTLPDAARNLLQCAALRQQAAALG
IRRIEGHDKGGFIEFSEKNHVDPLYLIGLLQQQPGVFRLDGPSKLKFICDLSERQARLAF
VERLLADFAEHRI
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaacaataccgtcttaccctgccagaacgttacccgttgcccgcgcgcgcgggc
gacgtccgccaactgggccagctgagcggctccgcctgcgcgctggagtgcgccgaaatc
gctgagcggcacgccggccccgtgatgctggtggtgcccgacatgcagaccgccctgcgt
ctgcgcgacgaaattccccagttcagccgccagtgggtcaccaccctggccgactgggag
acgctgccctacgacagcttctcgccgcaccaggatatcatctccgcccgcctctcctgc
ctctaccatctgccagggatggagcgcgggatcatcatactgccgatcaatacgctgatg
cagcgcgtctgcccgcacagcttcctgcacggccacgcgctggtgatgaaaaagggccag
cgcctggcgcgcgatgtcctgcgcgctcagctggagcaggcgggctaccgcagcgtggat
caggtgatggagcacggcgagttcgccacccgcggcgccctgctcgacctgttcccgatg
ggcagcgacgaaccctatcgcatcgactttttcgacgatgagatcgacagcctgcgcctg
ttcgacgtcgacagccagcgcaccctgaacgaggttgagcgcatcgatctgctgccggcc
cacgagtttcccaccgatcagacggccatcgagctgttccgcagccagtggcgcgagcac
tttgaggtgcgccgcgacgccgagcacatctaccagcaggtcagtaaaaggatctggccc
gccgggatcgaatactggcagccgctgttctttaaccagccgctgccgacgctgttcagc
tacctgccggcggggacgctgctgctggggctgggcgatctgcaccaggccgccgagcgc
ttctggcaggacattgagcaacgccgggccagccgcggcatcgatccgatgcgcccgctg
ctgccgccggaaagcctgtggatgcgcgtggatgaactgtttgccgccctcaagcagtgg
ccgcgcattcagctgacccgcgacgcgctcgacgaccatgccggacacaccaacctgcac
taccagccgctgccgaccctggcggtagaggcgcagagcaagaagcccctggctaacctg
cagcgcttcctggcggagtttagcggtagcgtagtgttcagcgcggaaagcgaaggccgt
cgcgaaactctgctggagctgctggcgcgcattcaggtggcgccgcggctgatcgcccgg
cttgaggaggccgagcccggcggccgctacatcatggtcggcgccagcgagcacggcttt
atcaacgccccgctggcgctggcgctaatctgcgaaagcgatctgctcggcgaacgcgtc
agccgccgtcgccaggatagccgccgcaccatcaacaccgacacgctgatccgcaacctg
gcagagctgacgcctggacagccggtcgtacacctggaacacggcgtgggccgctacggc
gggatgaccaccctggaggcgggcgggatcaagggcgagtacctgatcctcagctacgcc
ggcgacgccaagctgtacgtgccggtctcctcgctgcacctgctcagccgctacgccggc
ggcgccgatgacagcgcgccgctgcaccgcctgggcggcgacgcctggagccgcgcccgg
cagaaggccgcggaaaaagtgcgcgacgtggcggccgaactgctggatatctatgcgatg
cgcgccgccaaggcggggttcgccttccgccacgaccgcgaggcctaccagctgttctgt
cagggcttcccgtttgaaaccaccgcggaccaggagatcgccatcaacgcggtgctcagc
gacatgtgccagccgctggccatggatcgcctggtgtgcggcgacgtcggcttcgggaaa
accgaagtggctatgcgcgccgccttcctggcagtgcacagcggcaagcaggtggcggtg
ctggtgccgaccaccctgctggcccagcagcactacgataacttccgcgaccgcttcgcc
aactggccggtgcgcattgagctgatctcccgtttccgcagcgccaaagagcaggcgcag
gtgctggcggacaccgccgatggcaaggtcgatattctgatcggcacccacaagctactg
cagggcgacgtacaatggcgcgatctggggctgctgatcgtcgacgaagagcaccgcttc
ggcgtgcgtcagaaggagcgcatcaaggcgatgcgcgccgatgtggatattctgacgctc
acggcgacgccgatcccgcgtaccctgaacatggcgatgagcggcatgcgcgatctctcc
atcatcgccacccctccggcacggcgcatggcggtaaagaccttcgtccgcgaatatgac
agcctggtggtgcgcgaggccattctgcgtgaaaccctgcgcggcggtcaggtgtactac
ctgtacaacgacgtcgacaccatccagaaagccgccgatcgcctggcgaccctggtgccg
gaggcgcgcatcgctatcggccacggccagatgcgcgagcgcgagctggagcgggtgatg
aacgacttccaccaccagcgctttaacgtattggtctgcaccaccattatcgaaaccggg
atcgatattcccagcgccaataccatcatcattgagcgggcagaccactttggcctggcg
cagctgcaccagctgcgcgggcgcgtcggacgctcctaccatcaggcctatgcctacctg
ctcaccccgccgcccaaggcgatgaccgtcgatgcgcagaagcggctggaggcgattgcc
tcgctggaggatctcggcgccggctttgccctggcgacgcacgatctggagatccgcggc
gccggcgagctgctgggcgacgatcagagcggtcagatggccagcgtcggcttctcgctg
tacatggagctgctggaaagcgccgtcacggcgctgaaagaggggcgcgaaccctcgctg
gaggatctcaccagccagcagaccgaggtggagctacgtatgcctaccctgctgccggag
gagatgatccccgacgtcggcacccgtctctccttctacaagcgtatcgccagcgccggc
gacggggataccctcgccgacctgcgcgcggagctgatcgatcgcttcgggacgctgccc
gatgcggcgcgtaacctgctgcagtgcgccgcgctgcgccagcaggccgcggcgctgggg
atccgtcggatcgaggggcacgataaggggggattcatcgagttcagcgaaaagaaccac
gttgatccgctgtatctgatcggcctactgcagcagcagccgggggtcttccggctggac
ggccccagcaagctgaagttcatctgcgatctcagcgaacgtcaggcgcgcctcgccttc
gtcgagcgtctgctggccgacttcgccgaacatcggatctag
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