Electrophorus electricus (electric eel): 113585957
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Entry
113585957 CDS
T05787
Symbol
upf1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
eee
Electrophorus electricus (electric eel)
Pathway
eee03013
Nucleocytoplasmic transport
eee03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
eee00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
113585957 (upf1)
03015 mRNA surveillance pathway
113585957 (upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eee03019
]
113585957 (upf1)
Enzymes [BR:
eee01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
113585957 (upf1)
5.6.2.5 RNA 5'-3' helicase
113585957 (upf1)
Messenger RNA biogenesis [BR:
eee03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
113585957 (upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
113585957 (upf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
113585957
NCBI-ProteinID:
XP_026879571
LinkDB
All DBs
Position
Unknown
AA seq
1100 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTKEAELLGADTQGSEFEFTDFTLPSQTQTQGQTQSQLDNQVNG
PDGVLQNGEDAVVKPSQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSK
KWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKA
DSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQ
INKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLK
ESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDMAPLWKGIGHV
IKVPDNYGDEIAIELRSSAGAPVEVPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGY
IYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTV
TSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLA
LHNQIRNMDSMPELQKLQQLKDETGELSSSDEKRYRALKRTAERELLMNADVICCTCVGA
GDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGL
SQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQWP
QPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQR
SYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLN
VALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLV
NTINPGARFMSTAMYDAREAMIPGSVYDRSSTGRPSNMYFQTHDQIGMIGAGPNPMASMN
IPIPFNLVMPPMPPPGYLGQVNGPAAGRGAPKGKTGGRGGRQRNRGVGNHGSGQANMASS
QASQDLVSQPFSQGPLTQGYITMSQPSQMSQPGLSQPELSQDSYLGDEFKSQMDVALSQD
STYQGERAYQHGGVTGLSQY
NT seq
3303 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtagaagcgtacggcccgagctcgcagacactcaccttcctggacaccaaggaa
gcggagttgctcggagctgatacccagggctcggagtttgagttcaccgatttcacactg
ccaagccagacgcagacccagggccaaacgcagagccagctggacaaccaggtgaatgga
ccagacggagtcctacagaatggcgaggatgctgttgtaaaacctagtcaacttctggct
gagctgaattttgaagaagatgaagaggatacctattacaccaaggatctccctgtgcat
gcctgcagttactgtggtatccatgatcctgcttgtgtggtatattgcaataccagcaag
aaatggttttgcaatggtcgtggcaacacctctggcagccatattgtcaaccatttggta
agggccaagtgtaaggaggtgaccctgcacaaggatgggccactgggggagactgtgctg
gagtgttacaactgtggctgccgcaatgtcttcctcctgggcttcatcccagccaaggct
gattctgtggtggtgctcctgtgcaggcagccgtgcgccagtcagagcagtctgaaggat
attaactgggacagttctcagtggcagcctctaatccaggaccgctgcttcctgtcctgg
ctggtgaagatcccatctgagcaggagcaactgagggcacgccagatcacagcccagcag
atcaacaaactggaagagctctggaaggagaaccccactgcaacgctggaggacctagag
aagcccggcgtggatgaggagccccagcatgtgctgctgcgatacgaggacgcctaccag
tatcagaacatcttcgggccactggtcaaactggaggccgattatgacaagaagctcaaa
gagtcccagacccaagataatataactgtcaggtgggacttgggcctgaataaaaagagg
attgcttatttcactcttcccaagacggattcaggtgatatgcgtctgatgcaaggggac
gagatttgtctgcgttacaagggggacatggctcctctctggaagggtattggacatgtc
atcaaggtgcctgacaattacggagatgagattgccattgagctaaggagcagcgctggg
gctcccgtagaggtgccccacaacttccaggtggactttgtgtggaaatccacatctttt
gatcgtatgcagagtgctctgaagacatttgcagtggacgagacctcagtgtctggctac
atctaccacaagcttttgggccacgaggtggaggatgtgatcatcaagtgccagctgccc
aagcgctttactgctcaaggcctgcctgacctcaaccactcacaggtgtatgcagtgaaa
actgtgttgcagcgtcccctcagtctaatccagggccctccaggtactggcaagactgtc
acctcagcaaccattgtttaccacctggctagacagggcaatgggcccgtactggtgtgt
gcccccagcaacatcgccgtggatcagctgacagagaagatccaccagacggggctgaag
gtggtgcgtctgtgcgccaagagccgagaggccatcgactcgcccgtctccttccttgcc
ctgcacaaccagatccgcaacatggacagtatgccagagctgcagaagcttcagcagctg
aaggatgagactggagagttgtcttcctcagatgagaaacgctacagagccctgaaacgc
accgcagaaagagagctgctcatgaatgcagatgtgatctgctgcacctgtgtgggagca
ggtgatccccgcctcgccaagatgcagtttcgttccatcctgatcgacgagagcacacag
gccacggagcccgaatgcatggtgccagtggtgctgggagccaagcagttgatcctggtg
ggcgaccactgccagctcggccccgtggtgatgtgtaagaaggcggccaaggcagggctg
tcgcagtccctgttcgagaggctggtcgtactgggcatcaggcccatccgtctgcaggtg
cagtatcgcatgcaccccgcgctcagcgccttcccctccaacatcttctacgagggctcg
ctgcagaacggagtcactgctgccgaccgcatcaagaagggctttgacttccagtggccc
cagccagataagcccatgttcttctacgtgactcagggccaggaggagatcgccagctcc
gggacctcctacctcaacaggacggaggcggcgaacgtggagaagatcaccactcgacta
ctgaaggcaggagcaaagcccgaccagatcggcatcatcacgccgtacgagggccagcgg
tcctacctggtgcagtacatgcagttcagcggctccctgcacacaaagctttaccaggaa
gtggagattgccagcgtggatgccttccaggggcgggagaaggacttcatcatcctgtcg
tgcgtcagggccaatgagcaccagggcattggcttcctcaacgatccacgcaggctcaac
gtcgcactgaccagggccagatacggtgtgatcattgtggggaaccctaaggctctatcc
aagcagccactctggaaccacctgttgaactactacaaggagcagaaggttctggtggaa
gggcccctcaacaacttgagggagagcctcatgcagttcagcaaaccccgcaagcttgtc
aacaccatcaaccctggagctcgcttcatgagcactgccatgtacgacgcacgtgaggcc
atgattccgggctcggtgtacgaccgcagcagcaccgggcgtccttcgaacatgtacttc
cagactcacgaccagatcgggatgattggcgccgggccaaaccccatggcctccatgaat
attccgatccccttcaacctggtcatgccccccatgcccccaccgggctacctgggccag
gtgaacggccccgctgcaggcagaggagctccaaaaggcaagacgggtggacgcgggggt
cgtcagaggaaccgcggtgttggtaaccatggcagcgggcaggctaacatggcaagcagc
caggccagccaggacctggtgtcccagcctttctcgcagggcccgctgacccagggctat
atcaccatgagccagccatcacagatgagccagccaggcctgtcccagcctgaactctcc
caggacagctacctgggtgatgagttcaagtctcagatggatgtggcactgtcccaggat
tccacttatcagggtgaacgggcataccaacatggcggagtgactggactctcacagtat
tag
DBGET
integrated database retrieval system
