Endozoicomonas euniceicola: NX720_23725
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Entry
NX720_23725 CDS
T08536
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
eei
Endozoicomonas euniceicola
Pathway
eei03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
eei00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NX720_23725 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
eei03400
]
NX720_23725 (mfd)
Enzymes [BR:
eei01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NX720_23725 (mfd)
DNA repair and recombination proteins [BR:
eei03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NX720_23725 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
AAA_30
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
UYM15797
LinkDB
All DBs
Position
complement(5821079..5824555)
Genome browser
AA seq
1158 aa
AA seq
DB search
MSQASLPLPTHAGDKIIWANLDQTASAWAIANAARAGSKPLLVIAPDSNRANSLEEELNF
FLRGTPSPTGKQPIEIMHFPDWEILPYDAFSPHQDIVSQRLETLYRLPDRQHCILIISIT
TLLHRMSPRSYLESNCLVISRGDTFLLEQRRQQLEQAGYRCVDTVYEHGEFAIRGALMDI
FPMGADQPFRIDLFDDEIDTLRAFDPETQRSTEQVDSIELLPGHEFPMDKTSRDQFRSRF
RDTFDVDYRECPLYQDIGQGMASPGIEYYLPLFFEQTATLLDHLPKQTIVVQCQGVQEAL
QHFWKDVNERYENRKVDPLRPLLPPHRVLMPPEELNGKLMNYGRARLDTDRVQEKQGRYN
LSHAPLPELTLNARADNPLAPLESFIASGPRILLVAESAGRREVLLEMLAQNQIKPVEFA
NWSTFLNHSETLGITLGSLEAGLHLSEPDVALVPEALLLGQRVMQKRRRRGDSDYQTDQV
IRNLTELREGAPVVHIDHGVGRYRGLQTLSVDAQEAEFVTLEYASEAKLYVPVASLHLIA
RYTGTDDELAPLHRLGSEQWTKARRKAAEKARDAAAELLDIYARREARQGFAFDSPDQHY
HAFSAGFPFEETPDQQQAIESVVKDMTAIQPMDRLVCGDVGFGKTEVAMRAAFMAVQSGK
QVAILVPTTLLAQQHYESFRDRFADWPVEIDVVSRFRSAKQVQGLKEKLREGKIDIIIGT
HKILQGDLHFKNLGLLIIDEEHRFGVRHKEKLKSLRSEVDILTLTATPIPRTLNMAMSGI
RDLSIIATPPAKRLSVKTFVRQHDEQLIKEAVLRELLRGGQVYCLHNEVSSIEKAAEDLQ
ALIPEARIGIGHGQMRERELEQVMSDFYHKRFNILVCTTIIETGIDVPSANTIIIHRADK
FGLAQLHQLRGRVGRSHHQAYAYLMTPSPKSMTRDASKRLDAISEAQDLGAGFMLASNDL
EIRGAGELLGEDQSGQIQSVGFTLYTEMLEKAVNAIRLGETPNLDKPLQQGTEVNLRLPA
LLPEDYIHDVHNRLILYKRIAAAGSDNDLKSLQVELIDRFGLLPKQAKNLFRQTRIRLTA
EKLGIIKLDAGEDNIRIEFEDQPKVDPLAIIQMIQADPHLYKLEGSSVFKYSGAISGAME
QPEQRFATVESLLQKLTG
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaggcaagccttcctctgcccacccatgcgggtgacaaaatcatctgggccaat
ctcgaccagaccgccagcgcctgggccattgccaatgcagccagagcgggcagcaagccc
ctgctggtcatcgcgcctgactccaaccgggccaatagccttgaagaagaactgaatttt
ttcctccggggcacaccttccccgaccgggaagcaacctattgaaatcatgcactttccc
gattgggaaattctgccttacgatgccttctcaccccatcaggacattgtctcccagcgt
cttgaaaccctttaccgcctgcctgaccgccagcactgtatcctgattatttccatcacc
accctgcttcaccgcatgagtccccgcagctatctggaatctaactgtctggtgattagc
cggggtgatactttcctgctggaacagcgtcggcaacaactggaacaggcgggctaccgt
tgtgttgacacggtgtatgagcacggtgagtttgctatccgtggtgccctgatggatatt
ttccccatgggggctgaccagccattccgtatcgacttgtttgatgacgagatcgacacc
ctgcgcgccttcgatccggaaacccagcgttcaaccgaacaggttgatagcatcgaactg
ctgccgggccatgagttccccatggataaaaccagtcgggatcagttccgcagtcgcttc
cgggacacctttgacgtggattaccgggaatgccctctctatcaggatattggtcagggc
atggccagtccgggcattgaatattacctgccactgttctttgagcagacggcgacactg
cttgaccaccttccgaaacagaccattgtcgttcagtgtcagggcgttcaggaggctttg
cagcatttctggaaagacgtcaatgaacgttatgaaaaccgtaaggttgacccgctgcgc
cccctgctgcctccacaccgggtgctgatgccgccggaagaactcaatgggaaactgatg
aattatggtcgagcccgactcgatactgacagggttcaggaaaaacaggggcgctataat
ctcagccatgcaccactgcctgagctgacactgaatgccagggccgataaccctctggcc
ccactggaaagctttatcgcttccggcccgcgcatccttctggtggcagaaagcgctggt
cgtcgtgaagtgctcctggaaatgctggctcagaaccagattaaaccagtagaatttgcc
aactggtcaaccttcctgaatcacagtgaaacgctgggtattacccttggttcactggag
gctgggctgcatctgtcagaaccggatgtcgcattggttcctgaagccctgctgctgggt
cagcgggtgatgcaaaaacgacgccgtcgtggcgacagcgattaccagaccgatcaggtg
attcgcaacctgaccgaactgcgcgaaggcgcgccggttgtgcatattgatcatggcgtg
ggtcgctaccgtggtttgcagacgctttctgttgatgctcaggaagcagagtttgttacc
ctggaatacgccagcgaagcaaaactgtacgttcccgtcgcgtccctgcacctgatcgcc
cgctataccggcacggacgatgagctggcccctctgcatcgtttaggcagtgaacagtgg
accaaagcccgtcgtaaagccgccgaaaaagcccgggacgcggccgccgaactcctcgat
atttacgcccgccgtgaggctcgacaaggttttgcctttgactctccggatcagcattac
catgccttcagcgctggcttcccgtttgaggaaacaccggatcagcaacaggccatcgaa
tcagtggtcaaagatatgaccgccatccagcccatggacagactggtctgcggcgatgtg
ggctttggtaaaaccgaggtggcgatgcgggctgcctttatggcggtgcagagtggtaaa
caggtggcgatcctggttcccaccacactgctggcgcaacaacattatgaaagtttccgg
gatcgctttgctgactggccggtggaaattgacgtggtttcccgtttccgttcagcaaaa
caggtacaggggttaaaggaaaaactgcgggaagggaagattgatatcatcatcggtacc
cataaaattctgcaaggcgatctgcatttcaaaaaccttgggttactgattattgatgag
gaacaccgttttggcgtacgccacaaggaaaagctgaagtcactgcgttccgaagtggac
atcctcactctgacagccacgccaatacccagaaccctgaatatggccatgtccggtata
cgggatctgtcgattattgctacaccacccgctaaacgtctgtcggtaaaaacctttgta
cgccagcacgatgaacagctgataaaagaagccgttctgcgtgagctgctccgtggaggt
caggtctactgcctgcacaatgaggtctccagcattgagaaagccgctgaggatttacag
gcgttgataccggaagcccgtatcggcattggtcacggccaaatgcgtgagcgggagctg
gaacaggtcatgtctgatttctaccataaacgcttcaatattctggtgtgtaccaccatt
attgaaaccggtattgatgttcccagcgccaacaccattatcatccatcgcgcagataaa
ttcgggctggcgcagctgcaccagttaagggggcgcgtcggtcgctcccatcaccaggcg
tatgcctacctgatgaccccatcacccaagtccatgaccagagatgccagcaaacggctg
gacgctatttccgaagctcaggatttaggcgccggatttatgctggcgtctaatgatctg
gaaatccgtggtgccggagagttgctgggcgaagaccagagtggtcagattcagagtgtt
ggctttaccctgtatactgaaatgctggaaaaagccgttaatgcgattcgcctcggtgaa
acaccgaatctcgataaacctctgcaacagggaaccgaggttaatctgcgcctccctgcc
ctgttgccggaagattatattcatgatgttcacaaccgtctgattctctacaaacgcatt
gccgccgccggttcagacaatgacctgaaaagccttcaggtagaattgattgaccgcttt
ggcctgctgccgaagcaggccaaaaacctgttccgccagacccgtatccgcctgaccgct
gagaagctggggattattaagctggacgctggcgaagacaatattcgtattgaatttgaa
gaccagcccaaagttgaccctctggcgattatccagatgatccaggctgatcctcatctt
tacaaactggaaggaagcagtgtcttcaagtacagtggcgctataagtggagccatggaa
caacctgagcagcgcttcgccaccgttgaaagcctgctacagaagctgacagggtaa
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integrated database retrieval system
