Candidatus Endolissoclinum faulkneri L5: P856_724
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Entry
P856_724 CDS
T04221
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
efk
Candidatus Endolissoclinum faulkneri L5
Pathway
efk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
efk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
P856_724 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
efk03400
]
P856_724 (mfd)
Enzymes [BR:
efk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
P856_724 (mfd)
DNA repair and recombination proteins [BR:
efk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
P856_724 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
MFD_D3
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AHC73928
UniProt:
V9TW45
LinkDB
All DBs
Position
complement(1264975..1268475)
Genome browser
AA seq
1166 aa
AA seq
DB search
MNMVDNFNQLFANFPIDIGRVAIASAPEGVEAEAICCLARSHGLLLHVACDDTMSSELKR
AIAFFDPELEVMQLPPWDCLPYDRVSPNKEIMGRRIEALSMLALRKLTAKPAVLLTSVNA
VLQRVPPKSFFVTSTMTLKLGEIISLEKITAFFASNGYYRSHTVHECGEYAVHGGTIDVF
PIGTEWPVRLDFFGDNLEEIRCFDPMSQRTIGNCKEISFLPVREVLLDAVTIQRFRSSYR
SLFGAELIGDPVYEAVSAGRFYNGMEHWLPLFYQTLSTVLDYVGNAPITLGHQVEESINN
RFEQIAAYHNTSRQILHSSDIETGNKYGQLNPSAMYLVPAEWDLLMSTRVVGVFTPFAIP
SADSVIDLGARSGISLAEARALGGSALYDGVRDVVMEEISQGQRVLIAACSKGSCDLIAR
LFHEHSINNVELVANIQAVQALPAAIVTTAVLPLKHGYRLGKLTIISECEIFGQSLLRKS
KWGRRRGKHLLRDISSLTEGDYVVHHEHGIGRYLGLKTLEISGAPHDVLCLEYLGGDKLF
VLVENIDVLSRYGDHDFKVQLDKLGGLGWRSRKAKVKKRLFEMAEKLITIAAKRELRKTQ
PLCLPVENYDKFCSRFPFIETEDQLKAIDDVLADMELSRPMDRLICGDVGFGKTEVALRA
AFVAAGQGYQVAVVVPTTLLSRQHYCSFVNRFQGFPIKVAQISRLVSTKEANKVRDGLRN
GNINIVVGTHALLSNHSHFNNLGLVIIDEEQHFGVSQKEFLKDMRDAVHVLTMTATPIPR
TMQMALSGLREMSLITTPPVNRLAVKTFVMPYDGMVIRDALLRERYRGGQTFYVCPRIED
LAHVHKNLLKLVLDLRIGLAHGRMAPNDLEDVISSFIDGNYDVLISTNILESGLDIPAAN
TIIIHRSDMFGLAQLYQLRGRVGRSKAQAYAYLTTHPTKILSALAKRRLEVLQTFNGLGA
CFSLASHDIDIRGAGNILGDKQSGQVKEVGIELYHEMLREAVDVTRAGDEMKVKNDTSWT
PQITINMPVLIPATYIPDISVRMSLYRRIAVLVNQDEIDSFIAELVDRFGPVPAEVNNLI
KIITIKLLCRTAGVEKIDAGPKGAIIAFRNNSFARPDKLITFIQQKVGFVHLRSDHRMVY
RYAWNNSEKLLRGLIVLMEKLVALAV
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atgaacatggttgacaatttcaaccagttgtttgctaattttccgatcgatattggacgt
gtggccattgcctcagccccggaaggagtggaggctgaggcaatatgctgtttggctaga
tctcatgggctacttttacatgttgcttgtgacgacacaatgagcagtgaactaaagaga
gctattgctttctttgatccagagctggaagtaatgcaattacctccttgggattgcttg
ccatatgatcgagtctcacccaataaagaaattatgggtcgtcgtatcgaagcactttcc
atgcttgctttgcgtaagcttactgcaaaacctgcggtgttacttactagtgttaatgct
gttttgcagcgagttccgcctaaaagtttttttgttacttctacaatgacactaaagctt
ggtgagataatttctttggagaagataaccgctttttttgcaagcaacggttattatcga
tctcatacggtgcacgaatgtggcgaatacgcagtgcatggaggaacgatcgatgtattt
ccaataggtacagaatggccagtgcgacttgacttttttggtgataatttggaagaaatt
agatgctttgatcctatgtctcagcgtactataggtaattgtaaggaaatatcgttttta
ccggtgagagaagtcctgcttgatgctgttacgatacagcgttttcgttctagctatcgc
tccctatttggtgcagaacttataggcgatcctgtttatgaagcggtttcagccggaagg
ttctataacgggatggagcattggttgccgcttttttaccaaactcttagcactgtgctt
gattatgttggcaatgctcctattaccctaggacatcaagtagaagagtctattaataat
aggtttgagcaaatagctgcatatcataatactagtaggcaaatcttacattctagcgat
atagagaccggtaacaaatacggtcagcttaatccatctgcaatgtatttggtgccagct
gaatgggatttactaatgtctacccgagttgtgggagtttttacaccttttgctatacct
tctgcagatagcgttattgatcttggtgctaggtctggtattagtctagcagaagcgcgc
gcacttggtggttctgcattatatgatggggtacgtgatgtagtgatggaggagattagt
caaggacaaagagtactcatagctgcttgtagcaagggttcttgcgacctaattgctcgt
ttgtttcatgaacacagcattaataatgttgaattagtcgctaatatacaggcagttcag
gctctgcctgccgcaatcgttacaacagctgtgttgccgctcaagcatggttatcgactt
ggtaaattaactattatttctgagtgtgaaatttttggccaaagtttgttgcgcaagtct
aagtggggaagacgtcgaggaaaacatttactgcgtgatatttcttcattaacagaaggc
gattatgtcgttcaccatgaacatggtatcggccggtatctcggcctgaaaactttggag
attagcggtgcgcctcatgatgtgctgtgccttgaatatcttggcggcgataagcttttc
gttttagttgaaaatattgacgttttatctcgctatggtgatcatgattttaaggtgcag
cttgacaagcttggcggtcttggttggcgttctcgtaaggctaaggtcaaaaagcgattg
tttgagatggcagaaaagctaattactattgccgccaagcgagagctgcgtaagacgcag
ccgttgtgtttgccggtggaaaattatgataagttttgtagcagatttccttttattgag
acagaagatcaacttaaagcaatcgacgatgtattagctgatatggaattatcaaggccg
atggatcggctgatttgcggagatgttgggtttggcaagacagaagttgccttacgggct
gcttttgtggcagctggtcaaggatatcaagtagcggtagtggtacctacaactttgctt
tctcgccagcattactgtagttttgttaatagatttcaaggtttccccattaaagttgct
caaatttctcgccttgtttctactaaggaagctaataaggttcgtgatggtttgcgtaat
ggaaatatcaatatcgtggttggcactcatgcactattgtcaaatcatagtcattttaac
aatcttggtcttgtcattatcgatgaagagcagcattttggcgttagtcaaaaagagttt
ctaaaagatatgcgtgatgccgtgcatgttcttactatgactgcaacaccgatcccacgc
actatgcagatggcgctttccggtttgcgtgagatgagcttaattacaactccaccagta
aataggctagcagtgaagacttttgttatgccatatgatggaatggttattcgagatgct
ctgttacgtgagcgctatcgtggtggtcaaacgttttatgtctgcccgcgtatcgaagat
cttgctcatgtacataagaacttgttgaagctagttttggaccttcgtataggtttagcg
catgggagaatggcgccaaacgatttagaggacgtaattagttcctttatcgatgggaat
tacgatgtgctaatctctacaaacattttggaaagcggtttggatattccggcagctaat
acaatcatcattcaccgatccgatatgtttggtctagcgcagctttatcaactacgcgga
cgagtgggaagatcaaaagctcaagcctatgcatatttaaccactcatccaaccaaaatt
ctatcggcgcttgctaaacgaaggttagaggttttgcaaacttttaacggtcttggtgca
tgcttttctttagctagtcatgatattgacattcgtggcgcaggtaatatcttgggcgat
aaacaatcaggtcaagttaaagaagtaggcattgagctctatcatgagatgcttcgtgag
gcggttgatgtgactagagccggtgatgagatgaaggtaaagaatgatacatcttggaca
cctcaaattactattaatatgccagtattaattcctgccacttatataccagacatttcg
gttcgcatgagcttgtatcgtcgtatcgctgtgttagttaatcaggatgaaattgatagt
tttattgctgaactagttgacagatttggacctgttccagcagaggtaaataatctaata
aaaattattactattaaattattgtgtcgaacagctggtgtggagaagatagatgcgggg
cctaaaggagctattattgctttccgtaataatagctttgcgcgccccgataaactgata
actttcattcagcagaaggtgggctttgtgcatctccgttctgatcatagaatggtttac
cgttatgcttggaataattcggagaagttgttgcgtgggctcatagttttgatggaaaaa
ttagttgctttagcagtgtga
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