Epinephelus fuscoguttatus (brown-marbled grouper): 125885039
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Entry
125885039 CDS
T08419
Symbol
lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
efo
Epinephelus fuscoguttatus (brown-marbled grouper)
Pathway
efo03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
efo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
125885039 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
efo03400
]
125885039 (lig4)
Enzymes [BR:
efo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
125885039 (lig4)
DNA repair and recombination proteins [BR:
efo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
125885039 (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
BRCT_2
DNA_ligase_A_C
BRCT
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
125885039
NCBI-ProteinID:
XP_049426359
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All DBs
Position
LG24:complement(12511214..12517592)
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AA seq
915 aa
AA seq
DB search
MEGTSKSVAADQPSVAAGQPSVAAQVPFFHLCTTLDKIQKSKLRPDKSRILRDFIESWRK
FHSVLHKDNPKTTDSFYPAMRLIVPPFERERMAYGIKESMLAKLYIDVLGLPKNGPEANK
LLNYRAPTISQGDAGDFASMAYFVLKKRCTSQGNLSIKEVNDFLDSVAINNASKQKDLVK
KSLLHLITQSTALEQKWLIRMILKDMKLGISKETVLQVFHPDAAELYNVNTDLNKVCQQL
HNPSVSLSEVSIGLFSAFKPMLAAVANIRTVEKQMGNSPFYIQTKLDGERIQLHKDGDVY
KYFSRNAFEYTQQFGGSPLEGSLTPYIHNVFKNHVVNCILDGEMMAYNPTTEAFMQKGSK
FDIKKLMDDSELQTCFCVFDVLLVNDQKLAKETLKKRYETLETVFTPVKGRMHLVPKADA
RTMQEVVNALNDAIDNREEGIMVKDPSSIYKPDKRGEGWLKIKPEYVDGLMDELDLLIVG
GYWGKGRRGGMMSHFLCAVAEAPKPGEKPSVFHTLCRIGSGYTMKELYDLGLKLAKHWKV
YRKNDPPASILCGTEKPEAYIEPCNSVIIQVRAAEIVSSDMYKTNCTLRFPRIEKIRDDK
EWHQCMTLADLDQFRSKASGKLASRHLRIDGDEPQKKKRKLPVKPKKVVGIIDHFKPQDL
SGVTKETDMFEDVEFCVLNGTEDHPKAELEKGVARCGGIVVQNPGRDTYCVIAGVENMRV
KNLVSCNQHDVVWAAWLLECLDQKEVVPWQPRHMIHMSPSTREHFAKEYDSYGDSYFVDT
DEQQLHEVFDRISNADAAVNVSQVEQRYGWEDLPTSMFRPFVVYMDGYADIGDPETTIPA
TCLDIRALEFRYHGGKVVQKLKEGVSHVIITEETRLLELRTLRRCFRKKFKIIRDSWVTD
SIKAGYLMNDNDYLV
NT seq
2748 nt
NT seq
+upstream
nt +downstream
nt
atggagggaacttctaaaagcgttgctgcagatcagccctccgttgctgcaggtcagccc
tctgttgctgctcaggttcctttctttcacctttgtaccactttagacaaaatccagaag
tctaaactccgtccagataaatccaggatccttagggatttcattgagtcatggaggaag
tttcactctgtgctccacaaggacaaccccaaaacaacagactccttctacccagctatg
cgcctcatagtgccgcctttcgaacgagagcgtatggcatatggcatcaaagagagcatg
ttagctaaactctacatcgatgtattaggacttccaaagaacggtccagaggctaataaa
ctgttgaactaccgtgctccgactatatcccaaggagatgctggagactttgccagcatg
gcgtactttgtgctgaagaaacggtgcaccagccaaggaaacctcagcatcaaagaagtc
aatgactttctggattcagtggcgatcaataacgctagcaagcagaaggatcttgtgaaa
aagagtctgctgcacctcatcacccagagcacagctctcgaacaaaagtggctcatcagg
atgattctgaaggacatgaagctcgggatcagcaaagaaactgttctccaggtcttccac
ccggatgctgctgagctctacaatgtcaacacggacttaaacaaggtatgccagcagctc
cacaacccctccgtgtctttaagcgaagtctctatcggactcttctctgctttcaagcca
atgttggcagccgtggccaacatccgcactgtggagaaacagatgggaaacagtcctttt
tacattcagaccaaactggatggagagcgtatacagctgcacaaagatggggatgtgtac
aagtactttagcagaaatgcttttgagtacacccagcagtttggaggatccccactggag
ggctcactcacaccttacatccacaacgtttttaaaaaccatgttgtaaactgcatcctc
gatggtgagatgatggcgtacaatccgaccacagaggccttcatgcagaaggggagcaaa
ttcgacatcaagaaactcatggacgactctgagctacagacgtgcttctgcgtgtttgat
gtgttgttggtcaatgaccagaagcttgccaaggaaacactgaagaagcgctacgagacc
cttgagacagttttcactccagtcaaggggaggatgcacctggttccaaaggccgatgct
agaaccatgcaggaggtagtgaatgcgctcaatgacgccattgacaacagagaagagggg
atcatggtgaaggatccttcgtccatatacaaaccagacaagcggggggagggatggctg
aaaatcaagccagaatatgtggacggcttgatggatgagctcgacctgctgattgttggt
ggctactgggggaaagggagacgtggtggtatgatgtcccatttcttatgtgctgttgcc
gaagctccaaagcctggcgagaagccctcagttttccacactctctgtcgcatcggctct
ggctacaccatgaaggagctgtatgacctcggtttaaagctagccaagcactggaaagtc
tatcggaaaaatgaccctccagcatccatcctgtgtggcacagagaaaccagaagcctac
attgaaccctgcaactcggtcatcatccaggtccgggcggctgaaatagtctcaagtgac
atgtataaaaccaactgcactctgcgtttccccaggatcgagaagatccgcgatgacaag
gagtggcaccagtgcatgactctggcagacctggatcagttccgcagtaaggcatctggg
aagctagcctcacggcaccttcgcatcgatggtgacgaaccgcagaagaagaagcgcaag
ctgccagtcaaacccaagaaggtggtggggatcatcgaccactttaagccccaggacctc
tctggggttaccaaggagacagatatgtttgaggatgtggagttctgtgtcctgaatggc
acagaggatcaccccaaggcggagctggaaaagggcgtggccagatgtggaggtatcgtg
gttcaaaacccaggaagggatacctactgcgtgattgccggcgtggagaacatgcgcgtg
aagaacctggtttcttgcaaccagcacgatgtggtgtgggccgcctggctgctggagtgc
cttgaccagaaggaagtggtcccgtggcaaccgcgtcacatgatccacatgtcgccctcc
accagggagcactttgccaaggagtacgacagctacggcgacagctactttgtggacacc
gacgagcagcagctgcacgaggtgtttgaccggatcagcaacgcagatgcggcagtgaac
gtcagccaggtggagcagcggtacggctgggaggaccttcccaccagcatgttcagaccc
ttcgtggtttacatggacggctatgccgacataggagacccggaaaccaccatacctgcc
acctgtttggacatcagggcgctggagtttcgataccatggagggaaggtagtgcagaag
ttaaaggaaggagtctctcatgtcattatcacagaggaaacaagacttctggagttaagg
actctgaggcgctgcttccggaagaaatttaagattataagagactcatgggtgactgac
tctatcaaagcagggtatctgatgaatgacaatgactacttagtttga
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