Epinephelus fuscoguttatus (brown-marbled grouper): 125888489
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Entry
125888489 CDS
T08419
Symbol
col7a1
Name
(RefSeq) collagen alpha-1(VII) chain
KO
K16628
collagen type VII alpha
Organism
efo
Epinephelus fuscoguttatus (brown-marbled grouper)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
fn3
VWA
VWA_2
Pur_ac_phosph_N
DUF4992
DUF717
Motif
Other DBs
NCBI-GeneID:
125888489
NCBI-ProteinID:
XP_049431831
LinkDB
All DBs
Position
LG1:27879729..27960402
Genome browser
AA seq
2899 aa
AA seq
DB search
MRSWFFAVTVLLSSMKRTEAQEPNVTSSDGRCNNVQAADIVFLVDGSSSIGRANFLQVKG
FMAGIIKPFAGSVSESGIRFGAIQYSDTSRVEFTFTTYLVGTEVVNAVENLNYKGGNTRT
GAGLKFVADNFFNPVSSRDVPKITILITDGKSQDGVQEPAQKLRSQGVHVFAVGIKSADR
NELAQISSQPSSDFTSFVGDFKLLNTLLPLVSQRVCSKAGGVYVSDEAFSGPANLQFTGQ
TSDTLRFRWNAAGGPVSGYVVQYVPLSGLGQPITAELRQETVSASQRTYTAGELRSGTDY
LVTVIAQYPNSVGESISAKQRTRSLPGVTSLRLIEAGFFSLSVGWDQPSSPVQGYRLTYG
PRGQPAAQLLVQALSADSTSVTLESLLPDTEYVISLYPLFPRNSASPSILNARTLRLESV
QQLTVETESEGSVRVRWGGVSGVRAYRLVWGPFTGRNVETVEVAGGSEFYTLSGLQPDTE
YIVTIIPLYEGNTEGPVATARFKIERQEQQVLRAATTGPSSIRLTWRIIPSSRGYRLEWR
AGEGGRAETLTFPRTTSSHELTGLQPNTEYIIKLYTLFEGREEATPVSTTSREEQPVGKV
SNLRVVESLGSTVRLGWTGVAGATQYRIIIQSTDVGTEEIRNIPGNQTTLDLRDLSVGVS
YGVSVTALVGENEGDPVTVYIKPEQGPGRVTNLRVTNANSRRIRIAWAGVTGSTGYRVTW
RQGNNPEQSRLLGAEATSFTIDGLQPDEAIVIGVASVVDQRVGEVVTLSSRTNPHGGSVS
GLRIVDVTSQKIRIAWSPSTRATGYKITWRREDGVETTRNVAANVNSFTIDGLQSDYAYA
VLVSSLIGSREGSPTTLNIRTESDQTVVGTVTSLQVQETRGEVVRVTWVGVQGATAYRVS
WRRTDGGEERSQVVDGDVTAVDLEQLDPGAQYEVQVMALVQNREGSPVSVRVTTPGAYTP
PPTVTATTLRVAEVTRDSVRLGWTPLPGATGYILRWRDETDTGVGFSVTLPAASSSYQVT
GLRLGRRYRFTIQPTFVSGLGTETSVDEHTVCVGGRLDVVFVVPASTDRIRFARPLRELL
TSAARSLNTIGPRDSQMGVVVYGYRPKIWFLLNRHGRSDTLLQEIQSTPFDESPGNNIGE
AVRYIRQYLLTPSAGRRPRVPGAVVIIADKKSADNLTLAASSLKASGVTVLAVGIDQADT
EELRQAVTDGSTQNILYARDAAQMDSAHTGLADLLCGIARIPDVGPGPEACPAQCPRGER
GERGEKGERGRDGSDGRKGEPGRDGLPGREGPRGPEGRPGPPGQTIPIERPGGVKGEKGE
RGFPGIDGSPGLPGRPGSPGNAGVPGPQGLPGIRGDPGESGVPGPQGPKGSQGERGEPGS
VSGGGLPGRKGEPGLPGIPGTPGRPGSDGAKGASGVPGISGQDGRPGIPGTPGLSIKGEK
GSPGDRGPPGVGSGVAVKGDMGSPGTPGPPGAMGPRGLAGPQGSKGDKGDVGDGAPGPPG
RQGEPGDRGARGPPGEIGSKGDRGQPGEPGSQGDRGERGPAGETGERGDPGKPGLAGTPG
LRGLPGPAGTPGEKGNEGARGEPGRSTPGFPGKKGEQGDRGQTGPEGPRGEKGEPGQRGE
RGLPGLGGSAAGSKGEPGERGQPGISGRPGAKGDAGDPGERGENGRPGLPGKPGLPGKAG
ERGEKGDEGTPGESGLPGKAGERGLRGLPGQPGRAGEKGDMGDPGEHGRNGSPGPTGPRG
EQGEVGPQGPPGPPGKVSDIAGQLRGDRGEKGDAGDPGEHGGKGQKGEAGTPGAAGLRGP
EGQRGPAGTRGDAGERGAPGEKGERGTSGLDGRPGLDGKPGAAGPPGQRGDPGKQGDPGR
DGLPGLRGEQGPPGPVGPPGNTGIPGKAGEDGKPGVPGKMGEDGVPGEDGRKGDKGESGA
AGRDGRDGQKGDRGLPGSAGPTGPAGAPGAPGSIGPPGQVLYVKGAEAAPIPGPQGPPGT
PGVPGIPGAVGARGDRGPPGLKGDAGDPGEDGMPGKPGTAVDVQKALAGFGIQMSDLKVV
VDRKDIPLSPPVQRDVKGDKGDRGETGPRGPSGADGSRGLPGDRGAKGDQGERGISGAPG
PPGRAIGERGPEGPPGPAGEPGKPGIPGVPGRAGELGEAGRPGDKGERGEKGDKGDAGRI
GLSGAPGPPGQKGASADSVLVGSPGVRGPPGLAGPKGEPGAAGPPGPQGERGFVGSRGDK
GDRGQAGEKGRDGLQGIAGEPGKPGQDGKPGLPGFPGVLGRPGNPGEPGIRGPTGPMGPN
GSPGPAGVKGNQGEPGVGVQGPPGAQGSTGLPGPPGPPGAVGPQGPSGLPGQVGEAGKPG
VPGRDGVPGKDGIPGLPGKQGISGPPGQNGLKGEQGDSGPPGKAVAGPPGPKGERGPNGV
TLPGTAGERGLPGEKGNRGDKGVPGNKGERGVDGEPGEPGEDGAKGSPGPKGDKGEKGIG
QEGPPGRDGPVGLKGDPGLPGPAGPPGLQGKPGNSGLPGLRGEIGQPGPPGPPGERGLQG
FAGRAGNAGPPGPAGPPGQAGSPGTNGVKGDKGEVGVGLTGPRGERGEPGPRGEEGRAGL
DGERGITGPPGIRGIRGEKGDIGLQGDKGEKGDTVLVGGPAGEKGNKGETGDRGPKGVQG
EKGTKGQEGPPGEQGLRGEPGERGSTGFPGARGPGGQKGEAGQPGVPGESGLPGKDGLTG
RQGDKGESGIIGLRGIKGDRGPKGACGGDGPKGEKGDGGIHGRPGLPGRKGEQGEIGPSG
APGTPGKEGLVGPKGDRGFDGVAGPKGAQGEKGERGPPGVPGPPGPRGTDGAPGLTGPLG
PPGAKGPEGLQGQKGERGPVGPAMVGPRGIPGIPGERGEPGELGPDGAKGERGEPGMTEF
EVREYVRTEMSQHCACGGE
NT seq
8700 nt
NT seq
+upstream
nt +downstream
nt
atgaggagctggtttttcgctgtgactgtcctgctgtcctccatgaaacggactgaagct
caggagcccaacgtgacgtcttcagatggcaggtgtaataatgtgcaagcagcagatatt
gttttcctggttgatgggtcctccagtattggccgagctaacttcctgcaggtgaaaggc
tttatggctggaatcatcaagccatttgctggctctgtcagtgagtcagggatacgcttt
ggggccatacaatacagcgacacctccagagtggaattcacatttactacctacctggtt
ggcaccgaggtcgtcaacgctgtagagaatctcaactataagggtggaaacacacgcact
ggtgctggtctcaaatttgtcgctgataacttcttcaaccctgtgtccagtcgagatgtt
ccaaagatcactatcctgatcacagatgggaagtcccaggacggcgtgcaggaaccagca
cagaagctgcgcagccaaggagtgcatgtttttgcggttggtataaagagtgcagacagg
aatgagttggcccagatttcctcccagcccagcagtgatttcacctcctttgttggggac
ttcaaactgcttaacacacttcttcctctagtgagccagcgagtgtgttccaaagcagga
ggagtctacgttagtgatgaggcattttctggtccagccaacctccagttcacaggccag
acgtctgatactctcaggtttcgctggaatgcagcaggggggcctgtgagtggctatgtg
gtccagtatgtgccactctctggcctgggtcagcccatcacagcagaactacgtcaggag
actgtctctgccagtcagaggacctataccgcaggagagctaaggtcaggaaccgactac
ctggtgactgtcatcgcccaataccccaacagtgtgggggagtctatttctgccaagcaa
cgaaccaggtctctgccaggggtgaccagtctacgcctgatagaggcagggttcttttct
ctctctgtgggttgggaccaaccttcgtctcctgtacaaggctacagactcacctatgga
ccacgaggtcagccagcagcccagctgttggtgcaggctctgtctgcagactccacatct
gtcaccttggagtcccttctgcccgatacagagtacgtcatcagcctctaccccttattc
ccccgaaactctgcatccccatccatcctcaacgctcgcacattgcgccttgagtcagtg
cagcagttaacagtggagactgagtcagagggcagcgttcgtgtgcggtggggaggcgtc
agtggtgtgcgggcctaccgtctggtctggggaccatttacaggtcgaaatgtggagacg
gtggaggttgctggtggcagtgagttttacactttgtccggactgcagcccgacactgag
tacatcgtcaccatcatcccgctgtatgagggcaacaccgagggccctgtagcaaccgcc
aggttcaagatagagcgtcaggagcagcaggtcctcagagcagctaccaccggcccctcc
tctattcgtctcacctggagaattatcccatcctctcgagggtaccgcctagagtggagg
gcgggggaaggaggacgtgccgagaccctgacctttcctagaaccacttccagccatgag
ctaacaggccttcagcccaacacagaatatatcatcaagctgtacacgttgtttgaaggt
cgtgaggaagccacacctgtctccaccacatccagagaggaacagccagtggggaaagtg
tccaacctgagagtggtggagtctctgggcagcaccgtcagactcggctggacaggtgta
gccggggccacacagtaccgcatcattatccagagcacagacgtgggaacagaggaaata
cggaatatccctggaaaccagacgacccttgacctcagagacttgtcagtgggagtgtct
tatggagtcagtgtcacagcgctggttggagaaaatgaaggagacccagttactgtctac
atcaaaccagagcaaggtcctggcagagtgacgaacctcagagtgacaaacgcaaacagt
cggagaattcgaattgcctgggcaggtgttactgggtcgacaggttacagggttacttgg
agacaaggcaacaatccagagcagtctcgtcttctgggggcggaggctacatccttcacc
atagacggcctgcagccagatgaggcaatagtaattggtgttgcatctgtggttgatcaa
cgcgttggagaggtggtcacactgtccagtcggactaatccccacggtggatcagtgtct
ggccttcgcatcgttgacgtcacatctcagaagatacgcattgcatggtcaccttccact
agggcaactggctataagatcacttggcgtcgtgaagatggagttgaaacaacgcgtaat
gtggccgccaacgtcaattccttcaccattgatggactacagtcagattacgcctacgct
gtgttagtttcttcacttattggctctcgagaaggaagtcctaccactctgaacatcagg
acagagtcagatcagactgtggtagggactgtgacgtcactgcaagttcaggagacccgt
ggagaggttgtccgagtcacttgggttggtgtccaaggagcaacagcgtatcgggtgtct
tggaggagaacagacggtggtgaagagaggagtcaggtggtggacggagatgtgacagca
gtggatttggagcagttggatcccggagctcagtatgaggtgcaggtcatggctttagtt
caaaacagagagggatcccctgtgtctgtcagagtcaccacacctggtgcctacaccccc
cctccgacagtaactgccacaactttacgagtggcggaggttacccgggattctgtgcgg
cttggctggactccactaccaggtgccacaggatatattctgcgctggagagatgagaca
gatactggtgtaggcttttctgttacgctccctgctgcgtccagctcttaccaggtgact
gggctgcgtttgggtcgtcgttatcgcttcaccattcagcccacttttgtcagtggattg
ggaacagagacctctgtagatgagcacactgtgtgtgtgggcgggcgtttggacgtggtg
tttgtggtgccagcatcgaccgatcggattagatttgcaagacctctgcgtgaactcctc
acaagtgcagcacggtcgctcaacactataggaccccgtgactcacagatgggagttgtt
gtatacggttacagacccaaaatatggttcctgcttaatcgccatggcaggtctgacaca
cttcttcaagaaatccagtccaccccctttgatgaaagccccgggaataacattggtgag
gcagtgagatacatcaggcagtatcttctgaccccctcagcgggacggagaccgagggtc
cctggtgctgtcgtcatcattgctgacaaaaaatcagctgacaacctgactttggcagcc
agcagcctcaaggcttcaggtgtgacagtgttagcagtgggtatagaccaggcggatacc
gaggagctgcgtcaggcagtgacggatggcagcacccaaaacatcctgtatgctcgtgat
gcagcacagatggactctgcacataccggtctggcagatttgctctgtggtatcgccaga
ataccagacgtaggtccaggtccagaggcgtgtcccgctcagtgccctcggggtgagagg
ggagaacgtggagagaagggtgagagaggcagagatggttcagatggacgcaaaggagag
cctggtcgtgacggtctgcctgggagggaaggccccagaggacctgaaggacgcccaggt
ccaccaggccagactatccctattgagcgcccagggggggtgaaaggagaaaagggggag
agaggttttcctggcattgatggaagtccagggttgccgggacgaccaggttcccctgga
aatgcaggggtcccgggtccacagggcctgcccggtatcaggggagatccaggtgaatca
ggtgtgccagggccacaaggaccaaagggcagtcaaggtgaaaggggtgaaccgggctct
gtatcaggagggggtcttccggggaggaaaggagagccaggcctcccgggaataccgggt
actccaggtcggccaggcagcgatggggccaaaggtgcctctggggttccagggatatct
ggtcaggatggccgcccaggtattccaggaacaccaggactctccatcaagggagaaaag
ggcagcccaggagacaggggacctccaggagtaggcagcggggtggccgtgaagggtgac
atgggctccccaggtactccaggtcctccaggggctatgggtcctagagggctagcagga
ccacaaggcagtaaaggagacaagggtgatgttggtgatggggcgcctggacctccaggc
aggcaaggagagcctggggacaggggtgcccgtgggcctccaggagaaattggtagcaag
ggtgaccgaggacagccaggtgagcctggatcgcagggagacaggggggagagaggaccg
gcaggtgaaaccggggaaagaggcgaccctgggaagccgggcctcgcaggaacaccaggg
ttgagaggtttaccagggcccgctggaacgccaggagaaaagggaaatgaaggtgcacgc
ggggagcccggcaggagtactccaggttttcccgggaagaaaggggagcagggggaccga
ggccagactggtcccgagggtccaaggggagaaaaaggagagccaggacagagaggagag
agaggtcttccagggttaggagggtcggctgctggatctaaaggagagccgggagagaga
ggacagcctggtatcagtggaaggccgggtgccaagggagatgcaggtgacccaggagag
aggggagagaatgggcggccaggactcccaggaaagcctggccttcctgggaaagcggga
gagagaggagagaagggtgacgaaggcacacctggggagtctgggcttccagggaaggcg
ggagaaagaggactaaggggactacccggtcagccaggacgagcaggagagaaaggagac
atgggagacccaggagagcacgggcgaaatggcagccctggacccacaggaccgagagga
gagcaaggagaagtgggacctcaagggcctccaggaccaccaggaaaagtgtctgacatc
gcaggccagctgagaggagacagaggagagaagggcgatgctggcgacccaggagagcac
ggaggcaaaggtcagaaaggcgaagcagggactcccggagctgcaggcctgcgaggtcct
gagggacaacggggacctgcaggcacaagaggtgacgcaggggaaagaggagcgcctgga
gagaagggagaaaggggaacatctgggttagatggacgtcctggtctggatggtaaacca
ggtgctgccggaccacctggacagaggggtgatcctgggaaacagggggatcctggaaga
gatggtttaccaggacttagaggggagcagggcccaccaggacctgttgggcctccaggc
aatacagggatacctggtaaagcaggtgaagatggaaaacccggtgttcctggcaaaatg
ggggaggatggtgtgccaggtgaagatgggagaaagggtgacaaaggagaatcaggagca
gcgggaagagatggccgtgacgggcagaaaggggaccggggccttcctgggtctgcggga
cccactggccctgctggggctcctggagcacctggcagcattggtcctcctggacaggtg
ctgtatgtgaaaggagctgaagcagcaccaatcccaggcccacaggggcctccaggaacc
cctggtgtacctgggatccctggagctgtgggagccagaggggatagaggtccacctggc
ctcaaaggtgatgctggagacccaggagaggatgggatgccaggcaaacctgggacagca
gtggatgtacagaaggctctggccggctttggcattcagatgtctgatctgaaggtggtt
gtggacaggaaggacataccactgagtcctccagtgcagagggacgtaaaaggtgacaaa
ggggacagaggtgaaactggaccgagaggaccatctggtgcagatggttcccgtggcctt
ccaggagacagaggagcaaaaggggatcaaggggagagaggaatctcaggagcacctgga
cctccaggtagagccattggagagcgagggccagaaggaccaccagggcccgctggagag
ccgggcaaaccaggaataccgggagttcctgggcgagctggggaactaggggaggctgga
agacctggagataagggggagagaggagagaaaggtgacaaaggagatgctggaagaatt
ggtctatcaggagcacctggcccaccaggtcaaaagggagcatctgctgactcagtgctg
gttggttcgcctggggtcagaggccctccaggacttgcaggaccaaagggagagcctggt
gctgcaggaccaccgggacctcaaggagaacggggttttgtgggaagtcgaggtgataaa
ggagaccgaggacaggctggagaaaaaggacgtgatggcttgcagggaatagcaggagaa
ccaggaaaacctggtcaggatgggaaaccgggcttgcctgggttcccaggagttctaggc
agaccgggaaacccaggagagcctggcataagggggccaactggccccatgggtcccaac
gggtccccaggtcctgcaggtgtgaagggtaatcaaggagagccaggtgttggtgtccag
ggtcctcctggagcccaagggagcacaggtctgccaggaccaccaggcccccccggagca
gtaggtccacagggaccttcaggactaccagggcaggtgggtgaagcaggtaaaccagga
gtcccaggaagagatggggtgccgggcaaagatgggatacctgggttaccaggaaagcag
ggcatttctggacctccaggccagaacggcttaaagggggagcagggagacagcggtcct
ccaggaaaggctgtggctggaccccctggacccaaaggggagaggggtccaaatggtgta
acgctgccaggcacagctggggagagaggtctacctggagaaaagggtaacaggggagac
aaaggtgttcctggcaacaaaggagagagaggagtggatggtgagccaggagagcccgga
gaagatggggcaaaaggatctccagggccaaaaggagataagggagagaagggcatagga
caggaaggtcctcctggccgggatgggcctgtaggtttaaagggagatccaggccttcct
ggtccagctggtcctccggggctacaggggaagccaggtaacagtgggctgcctggcctg
agaggagaaattggacaaccaggacctcctggaccacctggggagaggggtctccaaggc
tttgcaggccgcgcgggaaatgccgggccccctggtcctgctggacctcctggacaggca
ggctctcctggtaccaacggggtcaaaggagacaagggggaagttggcgttggactcact
ggtcccagaggagaaagaggagaaccagggccgaggggagaggagggtcgtgctggcttg
gatggagagagggggataacaggtccaccagggatccgaggtattcgaggagagaaggga
gacatcgggctgcaaggtgacaaaggagagaagggggacacggtgctggtgggaggacct
gctggagaaaagggcaacaaaggagaaacaggtgacaggggacccaaaggtgttcaggga
gaaaaagggacaaagggtcaagagggccctccaggggagcagggtctgaggggagagcca
ggagaaagaggatccactggattcccaggtgctcgtggccctggtggacagaagggagaa
gccggtcaacctggagtacctggtgaatcgggtttaccagggaaagacgggctgacagga
cgtcagggggacaaaggggagtctggtatcataggattgagaggaatcaagggtgaccga
ggacccaagggagcttgtggaggtgatggacccaaaggagagaagggggatggtggaatt
catggacgaccaggcctaccaggaagaaaaggtgaacagggggaaattggaccctctggt
gccccagggacccctggaaaagagggactagtcggtcctaagggtgaccgtggttttgat
ggggtcgcaggacccaaaggagctcagggagagaaaggtgaaaggggtccacccggcgta
cctggtcctcctggtcccagaggaaccgatggagcccctggcctgactggacctctggga
ccacctggtgctaaaggcccagaggggctccagggacagaagggagagagaggtccagta
ggtcccgccatggtgggtccacgcggtatcccaggaatccccggggagcgaggagaaccg
ggagagttggggccagatggagccaagggagaaagaggagagccaggcatgacggagttt
gaggtcagagagtacgttcgcacagagatgagtcagcactgtgcgtgtggaggtgagtga
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integrated database retrieval system
