Eptesicus fuscus (big brown bat): 103299528
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Entry
103299528 CDS
T09083
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X2
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
efus
Eptesicus fuscus (big brown bat)
Pathway
efus03013
Nucleocytoplasmic transport
efus03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
efus00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
103299528 (UPF1)
03015 mRNA surveillance pathway
103299528 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
efus03019
]
103299528 (UPF1)
Enzymes [BR:
efus01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
103299528 (UPF1)
5.6.2.5 RNA 5'-3' helicase
103299528 (UPF1)
Messenger RNA biogenesis [BR:
efus03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
103299528 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
103299528 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
103299528
NCBI-ProteinID:
XP_008154600
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All DBs
Position
6:complement(16343009..16383492)
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AA seq
1119 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGPGGGGPG
VPVGAGAGAAAGQLDVQVGGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLP
VHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGET
VLECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFL
SWLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDA
YQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQG
DEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTS
FDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAV
KTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGL
KVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALK
RTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLIL
VGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEG
SLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTK
LLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIIL
SCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLV
EGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNMY
FQTHDQLGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGTPKGKTGRGG
RQKNRFGLPGPSQTNLPSSQASQDVASQPFSQGALTQGYISMSQPSQMSQPGLSQPELSQ
DSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3360 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggcccagctcgcagacgctcactttcctggacaccgaggag
gccgagcttctcggcgccgacacacaaggctccgagttcgagttcacagacttcaccctc
cccagccagacgcagacgcctcccggaggccccggcggccccggaggtggcggcccgggg
gtcccggtcggcgcgggtgctggcgctgcggccggacaacttgacgttcaggttggagga
cctgagggcatcctgcagaatggggctgtggatgacagtgtggccaagaccagccagttg
ctggccgagttgaacttcgaagaagatgaagaagatacctattacacaaaggacctacca
gtacatgcctgcagttactgcggaatacatgatcctgcttgcgtggtttactgtaatacc
agcaagaagtggttctgtaatggacgtggaaatacttctggcagccacattgtaaatcac
cttgtgagggcaaaatgcaaagaggtgactctgcacaaggatgggccccttggagagaca
gtcctggagtgttacaactgtggctgccgcaacgtcttcctgcttggcttcatccctgcc
aaggctgactcagtggtggtgctgttgtgcaggcagccctgtgccagtcagagcagcctt
aaggacatcaactgggacagctcgcagtggcagcccctgatccaggatcgctgcttcctc
tcctggctggtcaagatcccttcagagcaggagcagcttcgggcccggcagattaccgcc
cagcagatcaacaagttggaggagctttggaaggagaatccttctgccaccttggaggac
ctagagaagcccggagtggatgaggagccgcagcatgtcctcctgcggtatgaggatgcc
taccagtaccagaacatatttgggcctctggtcaagctggaggctgactatgacaagaaa
ctgaaagagtcacagactcaagataacatcacggtcaggtgggacctgggccttaacaag
aagagaatcgcctacttcactttacccaagactgactctgatatgcggctcatgcaaggg
gatgagatatgcctgcggtacaaaggggacctggcgcccctgtggaaagggatcggccac
gtcatcaaggtccctgataattatggcgatgagattgccattgagttgcggagcagtgtg
ggtgcacctgtggaggtgacacataacttccaggtggatttcgtgtggaagtccacctca
tttgacaggatgcagagtgcactgaagacttttgccgtcgatgaaacttctgtatcaggc
tatatctaccataagctgcttggccacgaggtggaggacgtaatcatcaagtgccagctg
cccaagcgcttcactgcacaggggctgcctgacctcaaccactctcaggtttacgctgtg
aagactgtgctgcaaagaccactgagcctgatccagggaccgccaggaacagggaagaca
gtgacctccgccaccattgtctaccacctggcacggcagggcaatgggcctgtgctcgtc
tgtgctccaagtaacatagctgtggatcagctgactgagaagatccaccagacggggctg
aaagttgtgcggctctgcgctaagagccgcgaggccattgactccccggtgtcattcctg
gccctgcacaaccagatccggaacatggatagcatgccagagctgcagaagctgcagcag
ttgaaggacgagactggggagctgtcatctgccgatgagaagcggtaccgagccctgaag
cgcacagctgaaagggagctgctcatgaacgcggacgtcatctgctgcacgtgtgtgggt
gcaggggaccccaggcttgccaagatgcagttccgctccattcttatcgacgagagcacc
caggccacggagccagagtgcatggtccctgtggtccttggagccaagcagctgatcctt
gtgggtgaccactgccagctgggccccgtggtgatgtgcaagaaggcagccaaggccggg
ctgtctcagtcactgtttgagcgcctggtggtgctcggcattcgtccaatccgcctgcaa
gttcagtatcggatgcaccctgcactcagtgccttcccttccaacatcttctacgagggc
tctctgcagaacggtgtcactgcagcggatcgagtgaagaaggggtttgacttccagtgg
ccccaacctgataagccgatgttcttctatgtgacccagggccaggaggaaatcgccagt
tcgggtacctcctatctgaacaggacggaggctgcaaatgttgagaagatcaccacaaag
ctgctgaaggcaggtgccaagccggaccagattggcatcatcacaccctatgagggccag
cgctcctacctggtgcagtacatgcagttcagcggctccctgcacaccaagctgtatcag
gaggtggagattgccagtgtggatgcattccaggggcgtgagaaggacttcatcatcctt
tcctgtgtgcgagccaacgagcaccaaggcatcgggtttttaaatgaccctcggcggctt
aacgtggccctgacccgagcaagatatggggtcatcattgtgggcaaccctaaggccctg
tccaagcagcccctgtggaaccacctgctgaattactacaaggagcagaaggtgctggtg
gaggggcccctgaataacctgcgggagagcctcatgcagttcagcaagccccggaagctg
gtcaacaccatcaaccctggagcccgcttcatgaccacagctatgtatgatgcccgggag
gccatcatcccaggatcggtctatgatcggagcagccagggccgaccctcgaacatgtac
ttccagacccacgaccagcttggcatgatcagtgctggccccagccatgtggccgccatg
aacattcccatccccttcaacctggtcatgccacccatgccacctccagggtattttgga
caggctaatggaccagctgcaggccgaggcaccccaaaaggcaagacgggtcgtggtgga
cgccagaagaaccgctttggccttcctgggcccagccagacgaacctgcccagcagccag
gccagccaggatgtggcatcacagcccttctctcagggggccctgacacagggctacatc
tccatgagccaaccctcccagatgagccagcctggtctctcccagcctgagctgtcccag
gacagttaccttggtgatgaatttaagtcccagattgatgtggcgctgtcgcaagattcc
acgtaccagggggagcgggcgtaccagcatggtggagtgacggggctgtcccagtactag
DBGET
integrated database retrieval system
