Qipengyuania flava: CHH26_09410
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Entry
CHH26_09410 CDS
T04986
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
efv
Qipengyuania flava
Pathway
efv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
efv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CHH26_09410 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
efv03400
]
CHH26_09410 (mfd)
Enzymes [BR:
efv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CHH26_09410 (mfd)
DNA repair and recombination proteins [BR:
efv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CHH26_09410 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
SecA_DEAD
MFD_D3
UB2H
AAA_30
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ASP30416
UniProt:
A0A222EVK0
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All DBs
Position
1903285..1906776
Genome browser
AA seq
1163 aa
AA seq
DB search
MPDLSTILKARQPLTLAQVARGAQPLVMADLARASSGRAVFIAPDDAAMRGVVDAATFFA
PELEVIEFPAWDSLPYDRASPALSISAKRLAALHRLQAGKAKAQLVVTTANAVLQRVLTP
FRIRESVREFKPGAEIGRESLGALLQRQGYGRTDTVIDKGEYAVRGSIVDIFPSGMDEAL
RLDFFGDELESLRTFDPNTQMSTGRLDSHLLLPASEALLDDDSIKRFRSRYREMFGANAT
QDPLYEAVSEGRRLAGMEHWLPLFEDKLATLFDHLGKDDLVVIDQAALAAADERVKDISD
YHDQRKAITGQAKGNYRPLAPDALYLSDTEFREALAAAPAHRATAFDEPESDGVVGFGFR
SGRDFAPERARGDNVYPVLAEHLAKLAKDGKRPLLAAYSKGSRSRIASILEEAGTPVQLA
ETWQEALGLSAKGKPTAMILPVEASFANNEMELLTEQDILGDRLVRRKKKRKDADAFLAE
LQALSVGDLIVHTEHGIGKYLGLEPIPVGKSKHDCVQLEYKGGDKLFIPVENIDVLSRYG
SSEEAVMLDRLGGEAWQKRRARLKERIREIAGELMQVAAQRALKKAPVLEVEDGSYNQFL
DRFPWEETDDQERAIEDVLRDLESGKPMDRLVCGDVGFGKTEVALRAAFVAAMNGQQVAV
VAPTTLLARQHFENFSNRFKGFPLKVGRLSRLVSAKEMKETREGLESGQIDIVVGTHAIL
SKQTKFKELGLVIVDEEQRFGVTHKEKLKQLRADVHMLTLTATPIPRTLQMAMTGLRELS
TIQTPPVDRLAVRTYVMEWDDMVMREALLREHHRGGQSFIVVPRISDMEQISDWLHENMP
EVKFVAAHGQMSAGEIEERMSAFYEGKYEVLLATTIVESGLDLPSANTIIIHRADIFGLA
QLYQLRGRVGRSKLRAYAYLTYGADTQLSEVAEKRLKVLGDLDSLGAGFQLASHDLDIRG
AGNLLGDEQSGHIREVGFELYQSMLEDAILAAKAGDMGLEAKSERVSPQITVDAPIMIPE
DYVPDLAVRMALYRRLNDASDKAEIEALAAEMIDRFGDLPAATANLVRLIEIKHQAIEAN
IAKIDVGAQGTLVTFHQDDFPDPAGLLAYVDRLKGTAKLRPDMKLVISRAWGSPESRLNG
LFQLTKGLSGVVRKSRKNAKAAA
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atgcccgacctctccactatcctcaaagcccgccagccgctcactctggctcaggtggcg
cgcggcgcgcagccgctggtcatggccgacctcgcgagagccagcagcggccgtgcggta
ttcatcgcgcccgacgacgcggcgatgcgcggtgtggtcgatgcggcaaccttcttcgcg
cccgaactcgaggtcatcgaatttccggcatgggattcactcccctacgatcgtgccagc
cccgcgttgtcgatcagcgccaagcggttggcggcgctgcaccgcctgcaagcgggcaag
gccaaggcgcagctggtcgtcaccaccgccaatgccgtgctccagcgcgtgctcactccg
ttccggatccgcgaaagcgttcgcgaattcaaaccaggggccgaaatcggacgcgagagc
ctcggcgcattgctgcaacggcaaggctatggccgcaccgacaccgtgatcgacaagggc
gaatatgccgtgcgcggctcgatcgtcgacatctttcccagcggcatggatgaggcactg
cggctcgatttcttcggcgacgagctggagagcctgcgtactttcgatccgaatacgcaa
atgagcacggggcggctggattcgcacctgttgcttcccgcaagcgaagcactgctcgat
gacgacagcatcaagcgcttccgcagccgctatcgagagatgttcggcgccaatgccacg
caggacccgttgtacgaagcggtcagcgaagggcgccgtctggcgggcatggagcactgg
ctcccgttgttcgaggataagcttgccacgctgttcgatcatctcggcaaggacgatctg
gtggtgatcgatcaggccgcgctggccgccgccgacgagcgcgtgaaggacatttcggac
tatcacgaccagcgcaaggctatcaccggacaggcgaagggcaattatcgcccgcttgcg
cccgatgcgctctacctttccgataccgagttccgcgaggcgctcgccgcagcgcccgcg
caccgcgcgacagcattcgacgagcccgaaagcgatggtgtcgtcggcttcgggttccgc
tcgggccgcgacttcgcccccgagcgagcgcgcggtgacaatgtttatcccgttctcgca
gagcatctcgccaagctcgcgaaggacggcaagcgcccgctgctcgcggcctattcgaaa
ggcagccgctcgcgcatcgcctcgatcctcgaagaagccggtacgccggtccagctggcc
gaaacgtggcaagaagcgctcggactgtcggccaagggcaagcccacggcaatgatcctg
ccggtcgaggccagtttcgccaataacgagatggaactgctgaccgagcaggacatcctc
ggtgaccgccttgtccgccgcaagaagaagcgcaaggatgccgacgcctttcttgccgag
ctgcaggcactcagcgtgggcgacctgatcgtgcataccgagcacgggatcggcaaatat
ctcgggctcgaaccgatcccggtgggcaagtcgaagcacgattgcgtccagctcgaatac
aagggcggcgacaagctgttcatcccggtagagaatatcgatgtcctcagccgctacggc
agcagcgaagaggcggtgatgctcgaccggcttggcggagaagcctggcagaagcggcgc
gcgcggctgaaggagcggatccgcgagattgcgggcgaactgatgcaggtcgccgcgcag
cgagcgctcaagaaggcgcccgtgctcgaagtcgaggacggctcatacaatcagttcctc
gatcgcttcccatgggaagaaaccgatgatcaggaacgcgcgatcgaagacgtcctgcgc
gatctggagagcggcaaacccatggatcggctggtctgcggcgatgtcggcttcggcaag
acggaagtcgcgctgcgtgccgccttcgtcgcggcgatgaacggccaacaggttgcagtg
gtcgcgccaaccaccctgcttgcgcgccagcatttcgaaaacttttcgaatcgcttcaag
ggcttccccttaaaggttggacggttatcgagattggtttcagccaaggagatgaaagag
acgcgtgaggggctcgaaagcggccagatcgatatcgtcgttggaacgcatgcgatcctg
tcgaaacagaccaagttcaaggaactgggtcttgtcatcgtcgacgaggaacagcgcttt
ggcgtcacgcataaggagaagctcaagcagcttcgcgcagacgtgcacatgttgacgctc
accgccacgcccatcccgcgcacgctacagatggccatgactggcctgcgcgaactgtcg
accatccagaccccgcccgtcgaccggttggcggtgcgcacctatgtcatggaatgggac
gacatggttatgcgcgaggcgctgctccgcgaacaccatcgcggggggcaaagtttcatc
gttgtcccgcgcatctccgacatggaacagatttccgactggctgcacgaaaacatgccc
gaggtgaagttcgttgctgcccatggccagatgagcgctggcgagattgaggagcgcatg
agcgccttctacgagggcaagtatgaggtacttctcgcgacgacgatcgtagaaagcggg
ctcgacttgccgagcgcaaacacgatcatcatccaccgcgccgacatctttggccttgca
cagctctaccagctgcgcgggcgtgtggggcgctcgaaactgcgcgcctatgcctatctc
acctatggcgcggacacccaactttccgaggtggcggaaaagcggctcaaggtccttggc
gatctcgacagtctcggtgcgggcttccagctcgccagccacgatctcgacattcgtggt
gcaggcaatctgctgggcgacgaacagtcgggccacatccgcgaagtcgggttcgaactc
taccagtcgatgctcgaagatgcgatactcgccgccaaggccggcgacatggggcttgag
gcgaagtccgaacgcgtgagcccgcagatcaccgtcgatgcaccgatcatgatccccgaa
gactacgtgcccgatctcgcggtccgcatggccctgtaccgccgtctcaacgatgcctca
gacaaggccgagatcgaggcgctggcggccgagatgatcgaccgcttcggcgatctgccc
gccgctacggccaacctcgtccggcttatcgagatcaaacatcaggcgatcgaagcgaac
atcgcaaagatcgatgtcggcgcacagggtacgctggtcaccttccatcaggacgatttc
cccgatccggcggggctgctggcctatgtcgaccggctcaagggcactgcgaagctgcgc
cccgacatgaagctcgtcatcagtcgtgcttggggttcgcccgaaagccggctcaatgga
ttgtttcagcttaccaaaggcttgtcaggcgtagttcgcaaatcgcgcaagaacgccaaa
gcggcggcctag
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