Sinorhizobium garamanticum: PZN02_001821
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Entry
PZN02_001821 CDS
T09001
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
egi
Sinorhizobium garamanticum
Pathway
egi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
egi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PZN02_001821 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
egi03400
]
PZN02_001821 (ligD)
Enzymes [BR:
egi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PZN02_001821 (ligD)
DNA repair and recombination proteins [BR:
egi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PZN02_001821 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
WEX89261
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All DBs
Position
1:complement(1974283..1976880)
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AA seq
865 aa
AA seq
DB search
MAARNEPLSEYNRRRDFRRTSEPKGTVARAHAGRKRFLVQKHDATRLHYDFRLEWEGVLK
SWAVTRGPSLDPEDKRLAVRTEDHPLAYGDFEGTIPEEEYGGGTVMLWDTGWWEPEGDPS
EGLKKGKLSFQLHGKRMSGGWALVRMRPRDDGKRESWLLIKENDKAASEDGESLVEKNLT
SVRTGRTMDEIAEGKGEKRARVWHSNKSTAANLNAGAVAENKDRRKRSTRKSTGKLPAFK
APQLATLVSKAPAGDEWLNEAKFDGYRLMVAIGGGTVRCYTRNGLDWTEKFPAIASALAE
LDCKSALIDGEVVALSEEGSTFSALQKALRTGATTRLYAFDLVELDGKDLSRKPLVERKE
RLKALLDTLDTTSTVQYSEHVEGNGKHVLAAICKAGQEGIIAKEANAPYRSGRTRSWLKV
KCTKRQEFVIGGYSPSTKKGRAFASILLGTFEGDKLVYRGGVGTGFAQKTLEELAAAFAK
RKRKTSPFDSVPRERERDAVWLTPDLVAEVDFTELTHDGYVRHGSFEGLREDKEAKAVKL
ETPKPTDAAAETGKGKRATRPRTVAPAKGDADVLGIRISHPDRVLFAGQGVTKIDLARYY
AVVADRMLPFAADHPVSLVRCPQGGQRQCFYQRHASDGFPQEIREVAIKEVSGETEKYMY
VRDAKGLVASVQMGTLEFHIWGATIDKLETPDRLVFDLDPDPSVDFATVKRAAVALRDEL
SDAGLTSVPMVTGGKGVHVIVPLVRRASWDEAKGFAKKMAQRFADRDPDRFIATMSKAKR
KGRIFIDWLRNERGATAICPYSTRAREGGPIATPVDWDELAELEAANSFRIADVLARIEA
GTDPWRDAGETRQTLTKKILSSVAD
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atggctgctcgcaatgaacccctttccgaatacaaccggcgccgcgactttaggaggaca
agcgagcccaaaggaactgtcgcccgggcacacgctggcaggaaacgctttctggttcag
aaacacgatgccacccgcctgcactacgacttccggctcgaatgggagggagtgctgaaa
agctgggccgtaacacgcggcccgagtctcgatccggaagacaagcgccttgcagtgcgc
accgaagaccatcccttagcctatggcgacttcgaaggcacgataccggaagaagagtac
ggcggcggcacggtgatgctctgggacaccggctggtgggagcccgaaggcgacccatcc
gaaggcctgaagaagggcaagctctcgtttcaattgcacggtaagcggatgagcggcggc
tgggcgcttgtgcgcatgcggccgcgagacgatgggaagcgtgaaagctggctgctgatc
aaggaaaacgacaaagccgcctcagaggacggtgagagcctcgtcgaaaagaacctgacg
agtgtccgcaccggccgcaccatggatgaaattgctgagggcaagggcgaaaaacgggca
cgcgtctggcattcgaacaagagcacggcggccaatctcaacgccggcgcagttgccgag
aacaaagatcgacgcaagcgctcaacgcgaaaatccaccggaaagctgcccgccttcaag
gcaccgcagcttgcgaccctggttagcaaggcacccgccggagacgaatggttgaacgaa
gccaagttcgacggctaccgcttgatggtcgctatcggcggcggcaccgtccgttgctac
acgcgcaacggtctcgattggaccgagaagtttccggctattgcctccgctcttgccgag
ctcgattgcaagtccgcgctgatcgatggtgaggtggtggcgctgtcggaggaaggctcg
actttttcggccctgcagaaggcactgaggaccggcgccaccacacggctctacgccttc
gatctcgtcgaactcgacggcaaggacctgagccgcaagccgcttgtcgagcgaaaggag
cggctgaaggctttgctcgacacgctcgacaccacctcgaccgttcagtacagcgagcac
gttgaaggcaacggcaaacatgtgctggccgccatatgcaaggccggacaggaaggtatt
atcgcgaaggaggcgaatgctccctatcgcagcggacgcacgcgaagctggctgaaggtc
aaatgcacaaaacgccaggagttcgtcatcggcggctatagcccgtcgacgaaaaaaggg
cgcgccttcgcgtcaatccttctcggcacattcgagggtgataagctggtttaccggggc
ggtgtcggcaccggcttcgcgcaaaagaccctggaagagctcgcggccgccttcgcaaag
cgcaagcgcaagacgtctccgttcgacagcgtgccaagggaaagggagcgggatgccgtc
tggctgacgcccgatcttgtggcagaggtggatttcaccgagcttacccatgacggatat
gtccgccatggctcattcgagggattgcgcgaggacaaggaggccaaggccgtgaaactg
gaaacaccgaagccgacggacgccgcagcggagaccgggaagggcaaacgcgcgaccagg
ccccgcacagtggcgcccgccaagggcgatgccgatgtcctcgggattcgcatctcgcat
ccggaccgcgttctctttgccggccagggcgtcaccaagatcgaccttgcccgctattac
gccgtcgttgcggacagaatgctgcctttcgcggccgaccatcctgtttcgctggtgcgt
tgcccgcaaggcggacagcggcagtgtttctaccagaggcatgccagcgacggctttccg
caggagattcgcgaagtcgcgatcaaggaggtctcgggcgaaaccgagaaatatatgtac
gttcgcgacgccaaaggcctcgttgcctcggtgcagatggggacgctggaatttcacatc
tggggcgccacgatcgacaagctggaaacgcccgaccgtctggtcttcgatctcgatccc
gatccaagcgtcgacttcgccacggtgaagcgcgcggcggtagcgctgcgcgacgaacta
tcagatgccggcctgacatccgttcccatggtgaccggcggcaagggcgtccatgtcatc
gtgccgctggttcgacgcgcgtcttgggacgaggctaagggtttcgccaagaaaatggcg
cagcgtttcgcggatcgggatccggatcgtttcatcgccaccatgtccaaggccaagcgc
aagggccggatcttcatcgactggctcagaaacgagcggggcgccacggccatttgcccc
tactccacccgcgcccgcgagggcgggcccattgcgacaccggtcgactgggacgagctc
gccgagcttgaggccgccaacagcttccgcatcgccgatgttctcgcgcggatcgaagcc
ggaacagacccttggcgcgacgccggtgagaccaggcagacgctgacgaaaaagatactg
agctcggtcgccgactga
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