Echinococcus granulosus (hydatid tapeworm): EGR_05295
Help
Entry
EGR_05295 CDS
T05553
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
egl
Echinococcus granulosus (hydatid tapeworm)
Pathway
egl03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
egl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
EGR_05295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
egl03400
]
EGR_05295
Enzymes [BR:
egl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
EGR_05295
DNA repair and recombination proteins [BR:
egl03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
EGR_05295
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
BRCT_2
BRCT
BRCT_3
RNA_ligase
mRNA_cap_enzyme
Choline_bind_3
Motif
Other DBs
NCBI-GeneID:
36341010
NCBI-ProteinID:
XP_024351015
LinkDB
All DBs
Position
Unknown
AA seq
1064 aa
AA seq
DB search
MAFSPSMEGKKIADIFPFGTLCKFLEQVSSVDGAKKKKDYIFLFIQKWAAKYKRLVGDTG
PTAGNLGSFFPVLRLLIPSADRTRPAYGVGESTMARMLIKAFGLAPKGPDATRLLKKCKT
LLSKSATEEDLADIVHYVLRDHCATESSYSITKIHDTLDALASSPSQDQKLEIICHFTRN
ITVLELKWFVRIVSRRDLSLGIRDKALLSCLHPAAPSIWNVTQDLCAVCQRIAYIDPKLA
LSTDVYRKFKSVELFTAFKPMLCSRASSVDEICTAYQQEFSGSVDTGLCLEVKYDGERVQ
LHKSNTNYRFWSRTGREWSSSYGECGDSAKGSLTYRLHANGTTFANDVIDCILDGEMLAF
DRLTNRFVTKATGYDVKRAGLDDQSDNNKDVMPCFIVFDVLYLNGQLLTEMPLSRRKRIL
LTMFSSFKSTCEEVSSEVETCFKSTNNHSDDDNLEDYQIQQDRLLSLFAIEKGALYLGGF
LFTQPDKTRLACCFDTWVQHGAEGLVAKALCAPYTPDGRAGAGWWKLKPDYVLGLCTDLD
CLLVGAYAGTSAATCTTMFSTFLCAIVNDDDGDEIENKRRRLQSDHSSPPSFLTFCQVSC
GLKRDQLESLNRRLVSHWRQYGRRKINCNETEWLRVSGERPDFWIPPRHSLVLQIHAAEM
IPSASYSAGFTLRFPRVVAVREDKTWKDVASISEIKKLYQDTKGKMVKGKTIQSSDEDNK
SDTDSDKDKKPISRITSETASTSGFSTRRVQTSSKPSTSVLTQYYQSLTDSIEIESSAFA
DVEFCLYISSHFFGPSTDFGSKGDLEKAILKRSGKVVQNPGSDTTYIVTDRITAKISNLI
EATRKSTGRGKEGGYDIVSTEWLIQCIQANRLLPLRQDQVFASRPSTMLQLDGSREGINS
DFADLGPSGLSSDDCVYSISPSRLGVELFTQMPVRRLSTNEYIKFFEDDNFSDLILPLYG
ISIVLYGLIDTSPQLKMMIADLRSLQAIVHGPLTDISALLPERTGTVTHVVAMNERVRSS
AIEPVLEEIRNQIGQSGLPIAVTLDWAMGCASHKALLPVSNYHL
NT seq
3195 nt
NT seq
+upstream
nt +downstream
nt
atggctttctcgccgtctatggaaggcaagaaaatcgctgatatcttcccttttgggaca
ttgtgcaaatttctggaacaagtttcatcagtagacggtgcaaaaaagaaaaaggactat
atcttcttgttcattcaaaagtgggcagctaaatataaaagacttgttggggatactggc
ccgactgcaggaaatttgggcagcttctttccggttttacgtcttcttatcccatctgct
gaccgcactaggccagcgtatggtgttggagaatcaaccatggccaggatgctcatcaag
gcctttggtttggctccaaaagggcctgatgctaccagattactaaagaaatgcaaaaca
ttgttatccaaaagtgccactgaggaggacctggcggacatcgttcactatgtattacgg
gatcattgtgcgaccgagagctcttactcaataactaaaattcatgacacgttagatgcg
ctggcgtcctcaccttctcaagatcaaaagctcgaaataatctgtcatttcactcgtaat
ataactgttctggaattgaagtggttcgtgcgtatcgttagtcggcgcgatctgtcgtta
ggtatcagagataaagctttgctcagttgtcttcatcctgctgctccctccatttggaac
gttacacaggacttgtgcgctgtctgtcaacgaatcgcttacattgacccaaagttggct
ctgtccactgatgtttaccgcaaatttaaatctgttgaactgtttactgcctttaaaccc
atgctttgctctcgagccagtagtgtcgacgaaatctgtacagcctatcagcaggaattc
tcggggtctgttgacactggtctttgcctcgaagttaagtatgatggcgaaagagttcag
ttgcataagtcaaatacaaactaccgcttttggtctcgtactggtcgcgaatggagctcg
agttatggtgagtgcggcgattctgcgaaggggagcctcacatatcgtttacatgcaaac
ggcaccacttttgccaatgacgtcatcgactgcattcttgatggagagatgctcgctttt
gatagacttaccaaccggtttgtcacaaaggccacgggctatgatgttaaacgtgcaggg
cttgatgatcagtctgataacaataaggatgtcatgccgtgcttcatcgtcttcgacgta
ctctatttaaacggacagcttctcacggagatgcctctctcccggcgcaagcgtattctt
ctaacaatgttctcatcatttaagtcaacgtgtgaagaggtttcgtcagaagttgaaacc
tgttttaagtccaccaataatcacagtgacgatgacaatttggaagattatcaaattcag
caggatcgacttctttcactttttgcgattgagaagggagccttgtatttaggcggtttc
ttgtttacgcaaccggataagactcggctagcatgctgcttcgacacgtgggtgcagcat
ggtgcggaggggctggtggcgaaggcgctctgcgctccctacacccccgacggacgggca
ggggcgggctggtggaagctgaaaccggactacgtgcttggtctttgcactgacctcgac
tgcctccttgtcggtgcctacgctggtacctctgccgccacctgcacgacaatgttctcc
acattcctctgtgccatcgttaacgacgacgatggtgatgagattgaaaataagcgacgg
cgactgcaatcagatcactcatccccaccctccttcttgacattttgccaggtgtcatgc
ggattgaagcgcgatcaactggagagcctcaatcgccgcctagtgtctcattggaggcag
tacggcagacgcaaaataaactgtaacgagaccgagtggcttcgggtgtcgggggagcga
cccgacttctggattccaccgcgccattcccttgttcttcaaattcatgccgcagaaatg
ataccgagcgcctcatattcggcgggttttactcttcgatttcccagagtcgtagctgtc
cgagaggataagacgtggaaagatgtcgcctcaatatcggaaatcaagaagctttatcag
gacacgaagggtaaaatggttaaagggaagacaatccagtcttcagatgaggacaataaa
agtgatactgatagcgacaaagacaaaaaacccatttcacgcatcacttcagagactgca
tcgacaagtgggttttctacaaggcgtgtccaaacatcctcaaagccttcgacctcggtt
ctgacccaatactaccaatcattaacggattcaattgaaatcgagtcctctgccttcgct
gacgtggaattctgtctttatatttcatcccattttttcggcccatctactgactttggg
tcaaagggtgacttggaaaaggcgattcttaaaaggagtgggaaagtggttcaaaaccct
ggatcagatacaacctatattgtaacggatcgaatcaccgccaagatttccaatttgatt
gaagccacgcgtaagagcacgggtaggggtaaggaaggtggctatgacattgtatccacc
gaatggttgattcagtgcattcaggcgaatcgactactaccgctacgccaggaccaggtg
ttcgcatcacgtccgtcaacaatgcttcaacttgatgggtcccgtgagggcataaacagc
gattttgcagatttgggtccttctggtctttccagcgacgactgtgtctactccatttcg
ccgtctcgtctaggagtggaactattcacgcaaatgcctgttcgtcggctctccactaat
gaatacattaagttcttcgaagatgataacttttccgacctgatccttcctttgtacggc
attagcattgttctatatggtttgattgacacttctcctcaattgaagatgatgatagcc
gatctgcggtctttacaggccattgtgcatggtcctttgacggatatctcagccttactc
cctgagcggacgggcaccgtcactcatgtagttgcgatgaatgaaagagttcgcagctct
gcgattgagcctgtgttggaggaaatacggaaccaaattggtcaatcaggtctgccgatt
gcagttactttggattgggctatgggctgtgcttctcacaaggctttacttcctgtatcg
aactatcacttataa
DBGET
integrated database retrieval system
