Eucalyptus grandis (rose gum): 104415482
Help
Entry
104415482 CDS
T03547
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
egr
Eucalyptus grandis (rose gum)
Pathway
egr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
egr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104415482
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
egr03041
]
104415482
Enzymes [BR:
egr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104415482
Spliceosome [BR:
egr03041
]
Complex A
U2 snRNP components
U2 related factors
104415482
Complex B
104415482
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
FeoA
Motif
Other DBs
NCBI-GeneID:
104415482
NCBI-ProteinID:
XP_010025083
LinkDB
All DBs
Position
8:61788550..61794720
Genome browser
AA seq
1162 aa
AA seq
DB search
MEDVKHKSRKEAESKKAHRDHDRERERERNGERHRDKEREKKERDSRHSEREKSSDSDER
YEREREREKDKYREREKDRVRSRDREKEKSREKKRDKERERDREKEDREKEREKEKRERA
REKEREREKEKEKREREREDRERSREREKRERDREKEKEREREKEKEKERERERERERRI
REKEKRREVDSDYSEDDSQEHGKKRRRRDDDENYEERDREKGRSRGSKRRENNEDSPRRR
TDEEDSENKDDKPTREEELEDEQKKLDEEMEKRRRRVQEWQELRRKKEEMEREKHGEVNV
EEGKSGKAWTLEGESDDEEAAPTVKPDMDVDEDEVADNKTGDAMVVDSENGETAPALEEM
ENGSGGDEEIDPLDAFMNDLVLPEVEKLNNAVPTATAPDDNSEMKRKDKKINMSNGKQAR
NGPSKSMGRIIQGEDSESDYGDLENDGDRTEDEDDDEFMKRVKKTKAEKLSLVDHSKIDY
EPFRKNFYIEVKEISRMSAEEVAAYRKELELKLHGKDVPRPIKTWHQTGLTSKILETIKK
LNYDKPMPIQAQALPIIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVVAGDGPIGL
VMAPTRELVQQIHSDIKKFAKGIGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDI
LCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPERQTVLFSATFPRQVEI
LARKVLNKPIEIQVGGRSVVNKDIAQLVEVRPESERFLRLLELLGEWYEKGKILIFVHTQ
AKCDDLFRDMLRHGYPCLSLHGAKDQTDRESTINDFKSNVCNLLIATSIAARGLDVKELE
LVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEDEARYAPDLVKALELSEQVVPDDL
KALADAFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEVRRAAKKAQAKEYGFDEDKSDSDD
EDEGVRKAGGDISQQAALQLAALAAASRVSTASNVTPSTVGQMPNVLPSALPGVLGSTTS
AVLPGTLPGLPTDGAARAAAIAAAINLQHNLAKIQADAMPEHYEAELEINDFPQNARWKV
THKETLGPISEWTGAAITTRGQFFPPGKIPAHGERKLYLFIEGPTEQSVKRAKAELKRVL
EDVTNAALSLPGGAPQGRYSVI
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atggaggatgtaaaacataaatctcggaaggaggcagaatcaaagaaagctcatcgagat
catgatcgggaaagagaaagggagaggaatggggagagacatcgagataaggagagggaa
aagaaagagcgcgacagtcgacattctgaaagggagaagagtagtgattctgatgagagg
tatgagagagaaagggagcgagagaaggataagtatagagaaagggaaaaggatagagta
agaagtcgtgaccgtgagaaggagaaatctagagaaaagaagagggataaggagagggaa
agggatagagaaaaagaggatagagagaaggagagggagaaggagaagagagagagggca
agggagaaggagagggagagggagaaagaaaaggagaagagggaacgtgagagggaagat
agggagagaagtagagaaagagagaagagggaacgtgatagggagaaggaaaaggagagg
gagagagagaaggagaaggagaaggagagggagagggagagggagagggagagaaggata
cgagaaaaggaaaagcgtcgggaagttgatagtgattatagtgaagatgattcccaggag
catggcaagaagcgtcgaaggagagacgatgatgaaaattatgaagaaagagatcgtgaa
aagggtaggagcaggggaagcaagcgccgtgagaacaatgaagatagcccgaggaggagg
actgacgaggaggattcagagaacaaggacgataagcccactcgagaagaggaattagag
gatgaacaaaagaaattggatgaggagatggaaaagaggaggagaagagttcaagagtgg
caagagctgaggagaaagaaggaagagatggagagggaaaagcacggtgaagtgaatgtg
gaagaaggaaagtctgggaaggcctggactcttgaaggagaatctgatgatgaggaggct
gctcccacggtgaaaccagatatggatgtggatgaagatgaagttgctgataataaaact
ggggatgccatggtggtggattctgagaatggagaaactgctccagctttagaagaaatg
gaaaatggttctggtggagatgaggaaattgatccattggatgccttcatgaatgatttg
gtgttacctgaagtggagaagctgaataatgctgtgcctactgcaactgctcccgatgat
aattcagaaatgaagagaaaagataagaaaattaatatgagtaatggaaaacaggcgagg
aatggtccaagtaagtctatgggaagaattatccagggggaggattcggaatctgactat
ggagatcttgagaatgatggagatcgtacagaagatgaagatgatgatgagttcatgaaa
agggtcaagaagacaaaagctgaaaagctgtccttagttgaccattctaagattgattat
gaaccatttcgcaagaatttttatattgaagtaaaggagatttcgaggatgagtgctgaa
gaggtagctgcatacaggaaagagctggaattgaagctccatggaaaagatgtgccaaga
ccaattaaaacatggcaccagacaggacttacaagtaaaattctggagactataaaaaag
cttaattatgataagccaatgcctattcaagctcaggctctcccgataatcatgagcggt
cgagactgcataggtattgcaaaaaccggttctggcaaaacccttgcatttgtgctgcca
atgttgaggcacatcaaggaccagccacctgttgtagccggagatgggccgatcggtctg
gtgatggcacctacgagagagcttgtccagcagatacacagtgatataaagaagtttgcc
aaaggaattggtgtcagatgtgtgcctgtttatggaggttctggtgttgcccagcaaatt
agtgagttaaagcggggtactgagattgttgtctgtactccgggtaggatgattgacatt
ctttgcactagtggagggaagataacaaatctgcgtagggtcacgtacttggtcatggat
gaagcggatagaatgtttgacatgggttttgaacctcagatcactagaattgtccaaaat
atccgtccagaacgtcaaactgttctattttctgccacttttcctcgtcaggttgagatt
ctggcccgtaaggtcttgaacaaacctatagaaattcaggtcggtggcaggagtgttgtg
aacaaggatattgcccagttagtcgaggtgagaccggaaagtgaaaggttcctgagactg
ttagaattgcttggtgaatggtatgagaaggggaagatcttgatatttgttcatactcag
gcaaaatgcgatgatttgtttagagatatgctgagacatgggtatccgtgtctctcactt
catggggccaaagatcaaacagacagggagtccacgataaatgattttaagagcaatgtg
tgcaatttactgattgctactagcattgctgccaggggactcgatgtgaaggagcttgaa
ctggtgattaactttgatgttcctaatcattatgaagattatgtccaccgagttggtcgg
acaggtcgagctggtcgtaaaggctgtgctataacattcatatcagaggatgaagctaga
tatgcaccagatcttgtcaaggccttggaactttctgaacaagtagttcctgatgatcta
aaagcccttgctgatgctttcatggctaaagtgaatcagggacttgagcaagctcacgga
actggttatggaggaagtggttttaagttcaatgaagaggaggatgaagttaggcgagcg
gccaaaaaggcacaggccaaagaatatggctttgatgaagacaagtctgattcagatgat
gaggatgagggggtccggaaggcaggtggtgacatctcacagcaggctgcccttcaatta
gctgcccttgctgcagcttccagagtcagcacagcttcaaatgtgactcctagcacagtt
ggtcagatgccaaatgtacttccttctgcccttcctggtgttcttggttccacaacttct
gcggttctaccggggactctgcctggtttgcccactgatggggctgcccgtgcagcagct
atagcagctgccatcaatctacagcataatcttgcaaagattcaagctgatgccatgccc
gagcactatgaggctgagttggagataaatgattttcctcagaatgctcggtggaaagtt
acccacaaggaaactttgggccctatttcagaatggactggtgcagccattaccaccagg
ggtcagtttttccctcctggcaaaataccagctcacggagagcggaagctctacttgttt
attgaaggtcctaccgaacaatctgtcaagagagctaaagcagaattgaaacgtgttttg
gaggatgtcacaaatgcagcactatcacttcctggtggagccccacaaggcagatattca
gttatttaa
DBGET
integrated database retrieval system
