KEGG   Eucalyptus grandis (rose gum): 104421682
Entry
104421682         CDS       T03547                                 
Name
(RefSeq) general transcription factor IIH subunit 2
  KO
K03142  transcription initiation factor TFIIH subunit 2
Organism
egr  Eucalyptus grandis (rose gum)
Pathway
egr03022  Basal transcription factors
egr03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:egr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    104421682
  09124 Replication and repair
   03420 Nucleotide excision repair
    104421682
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:egr03021]
    104421682
   03400 DNA repair and recombination proteins [BR:egr03400]
    104421682
Transcription machinery [BR:egr03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     104421682
DNA repair and recombination proteins [BR:egr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     104421682
SSDB
Motif
Pfam: Ssl1 C1_4 VWA_2 IBR VWA Tfb4
Other DBs
NCBI-GeneID: 104421682
NCBI-ProteinID: XP_010032024
UniProt: A0A059AC54
LinkDB
Position
10:10610239..10614232
AA seq 423 aa
MNNGEGRRLAGQAEEEDDEDDVDECGLEAWERAYADERSWESLQEDESGLLRSIDNKALY
HAQYRRRLRSLASSNAASRIQKGLIRYLCIVIDLSRAASETDFRPSRMAVVAKNVEAFIR
EFFDQNPLSQIGLVTIKDGVANCLTDLGGSPESHIKALMGKLECSGDSSLQNALDLVCGY
LEQIPSYGHREVLILNSALSTCDPGDIMETIQKCKKSKVRCSVIGLSAEIFICKHICQET
GGLYSVAVDESHFKELILEHAPPPPAIAEFAIANLIKMGFPQRAAENVISICLCHKEARG
GGYTCPRCKARVCELPTECRICGLTLVSSPHLARSYHHLFPIAPFDEVTPVRLSSSQHKL
PKSCFGCQQSLLNPGNRPSLSVECPRCKQFFCIDCDIYIHESLHNCPGCESFRHFKTVSS
SEE
NT seq 1272 nt   +upstreamnt  +downstreamnt
atgaacaacggcgaggggaggcggctggccgggcaggcggaggaggaggacgacgaggat
gacgtcgacgagtgcggcctcgaggcgtgggagcgggcctacgccgacgagcggtcctgg
gagtctcttcaggaggacgagtccggcctactccgctcgatcgacaacaaggccctctac
catgcccagtaccggaggcgcctgcgctccctcgcttcgagcaatgcggcttctcggatt
cagaagggcctgatccggtacctctgcatcgtcatcgacctctccagggctgcctcggag
acggattttcgaccgagccgtatggccgtcgttgcgaaaaatgtcgaggcttttatccgg
gaattcttcgaccagaatccactaagtcaaataggtttagttaccataaaagatggggtt
gctaattgcttgacggatctcggtggaagtcctgaatcccatattaaagctctgatgggc
aagttggagtgctcgggcgattcctcgttgcagaatgccttagatcttgtttgtggatat
ctggaacagattccatcgtacggtcatcgggaagtgctgatattgaattcagccctaagc
acttgtgaccctggagatattatggagaccattcagaaatgcaaaaagtcaaaagtcagg
tgttctgttattggtctttctgctgaaattttcatatgcaaacacatctgccaggaaacc
gggggactatactctgttgcggtggatgagtctcactttaaggagttgatcctggagcat
gcacctcctcctccagcaatagcagagtttgcaattgctaatttgatcaagatgggtttc
ccccaaagagcagcagaaaatgtaatttcaatttgtttgtgccataaagaggctaggggc
ggaggatacacttgtccaagatgcaaagcaagagtatgtgaactaccaacagaatgtcgt
atttgtgggctcacccttgtttcttctccccatttggcgaggtcgtaccatcatctgttt
cctattgcaccttttgacgaggttactcccgtacgcctcagtagttctcagcacaagctg
cccaaatcttgctttggatgtcaacaaagtcttcttaatcctggaaataggcccagcctt
tctgttgaatgtccaagatgcaaacagtttttctgcattgactgtgatatttatattcac
gaaagtttgcataactgccccggttgtgagagcttcagacatttcaagactgtcagctct
agtgaagaatag

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