Eucalyptus grandis (rose gum): 104432833
Help
Entry
104432833 CDS
T03547
Name
(RefSeq) uncharacterized protein LOC104432833 isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
egr
Eucalyptus grandis (rose gum)
Pathway
egr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
egr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104432833
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
egr03000
]
104432833
03019 Messenger RNA biogenesis [BR:
egr03019
]
104432833
04121 Ubiquitin system [BR:
egr04121
]
104432833
Enzymes [BR:
egr01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
104432833
Transcription factors [BR:
egr03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
104432833
Messenger RNA biogenesis [BR:
egr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104432833
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
104432833
Ubiquitin system [BR:
egr04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
104432833
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
Baculo_IE-1
SET_assoc
Rtf2
Motif
Other DBs
NCBI-GeneID:
104432833
NCBI-ProteinID:
XP_010043680
UniProt:
A0A059D5G2
LinkDB
All DBs
Position
2:complement(41119733..41129702)
Genome browser
AA seq
1054 aa
AA seq
DB search
MHAQQEASLRGFALSLSLSFSPGRASSPPSRPSPNPLPAVSFPHPDTMCDEGEKTCPLCA
EEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKDETEGRCPACRAPYDKEKIVGTAANCE
RLVAEINTEKKMKCQRAKTKSSEGRKQLGSVRVIQRNLVYIVGLPLNLADEDILQRREYF
SQYGKVLKVSMSQTATGAIQQFPNNTCSVYITFSKEEEAVRCIQSVHGYVLDGRPLRACF
GTTKYCHAWLRNAPCTNPDCLYLHETGSQEDSFTKDEIISAYTRTRVQQMTGNGYCMQRR
TGSVLPPPFDYNCNSTLPSATKPNINNASNNAANVIKVSLPNGTTTRSATLPAAASWGQR
AQAATSECSDRPYKEKSAMASGVSITVVGADTAQHSPPHGDGVKKPPLNDQNCIAAKIML
GSSSCSKQHNCIESDLSLSVKPAAADGTTATDITGGRLSDLISSKEGRNISSMPQNTVKS
ARSTCESASTYAEKEEHAQINGKNKKLCSDVSSLSVHGKLQGESSGSPVPTFCISDPGWI
VSMGNQSILQQSCVDNYKESLPLAVVSNVPSNRDREVFFPTDRLPTMHSQVEEDVLCFNN
RRLEDPEVFDYSTSFSTSGNLSHVSNCSTSHSSQHSEVVNINNLSASLIPVDSNMEGRSS
AISSRNLEKMVNDRADLDRTSEVRERQFGMLQGNGSKVEMHNSLKAGESSMISNILSLDL
DLWSDSLSSPQHLANLLGESDKHEGSVRSSSYRKVQNSNQSRFSFARQEESITHAFDVNP
PFTITEQMPRNRSLDEDFGKNCRSYSHNPVVVNGSLSRFEEVGNRAASQSVLSSGSRSQI
SAPPGFSVPNKAPPPGFSSHERTDRNFDTYLGNHLPDINLLRNSYQTQPNASVNSTGDIE
FMDPAILAVGRGTIQGGFNSPSFDLGSLSQQLNTLDSDAGHNLLMKRSFPAHSNLRYETS
AGYASLNNSFDIASRIFDQSQMGNVSSYTQLSLQRSMSNGRWSGRNTIPGGDGVVMAELL
RNERLGINKICDSLENQKYCMPSSGDLCNRSFGM
NT seq
3165 nt
NT seq
+upstream
nt +downstream
nt
atgcacgcacaacaagaggcttcgcttcgtggtttcgctctctcgctctcgctctcgttc
tcgccgggtcgcgcgtcttctccgccatcccgtccctcgccgaatcctctccccgccgtc
tccttcccgcatccggataccatgtgcgacgagggagaaaagacctgtcctctttgtgct
gaggagatggatttgacggatcagcaattgaaaccttgcaaatgtggatatgagatatgt
gtttggtgttggcatcacataatggacatggcagagaaggatgaaacagaggggcgttgc
ccagcatgtcgagccccttatgacaaggagaagattgtagggacggctgcaaactgtgag
agattggtggctgaaattaatacagagaaaaaaatgaagtgtcaaagggcaaagacaaaa
tcttcagaggggagaaagcaattgggtagtgttcgggtgatacaacggaaccttgtgtac
atagtcggcttgcctcttaacttagcagatgaagatattcttcagcggagagaatacttc
agtcagtatgggaaggttcttaaagtatctatgtcccagacagctactggtgccattcag
cagtttccaaacaacacctgcagtgtatatattactttctcaaaagaggaggaagcagtc
cgttgtattcagtctgttcatgggtatgtgttggatggtagaccattaagggcatgtttt
ggaaccactaagtactgtcatgcatggcttagaaatgcgccctgcaccaacccagattgt
ctctatctgcatgagactgggtctcaggaggatagcttcaccaaggatgaaataatttca
gcatacacaaggactagggtccagcaaatgacaggcaatggctactgtatgcaaaggcgc
actggaagtgtattgccacctccatttgattataactgtaacagcaccttgccttctgcc
acaaaaccaaatatcaataatgcttcaaataatgcagcaaacgtgattaaagtttctcta
ccaaatggaaccactactaggtcggctactcttcctgctgcagcttcatggggacagcgt
gctcaagctgcaacttcagaatgttctgatagaccatacaaagagaagtctgcgatggct
agtggagtatccataactgtagtaggtgcagatacagctcaacattctccaccgcatggt
gatggggtgaaaaagccacccttgaatgatcaaaattgtatagcagctaaaattatgttg
ggctcatcaagttgttcaaagcagcacaattgtatagagtccgacctctctttgtcagtt
aaacctgctgcagcagatgggactacggctactgatattacaggtggcaggttatccgat
ttaataagtagcaaggaaggtagaaacattagtagcatgccccagaacactgtaaaatct
gccaggagcacttgtgaatcagctagtacttatgcagagaaagaagaacatgctcaaatt
aatggtaagaataagaaattgtgctctgacgtatcatcattaagtgtgcatggaaaactc
cagggtgaatcatcaggcagtccagtgcctaccttttgcatctctgatccaggatggatt
gtatcaatggggaatcagagtatactgcaacaatcatgcgtggataactataaagagtct
ttgcctttggcagtggtcagcaatgttccatccaacagggacagggaggtcttttttccg
actgatcgattgccaactatgcattctcaagttgaagaagatgtattatgtttcaataat
cgaagacttgaagatccagaagtctttgattattcaacttctttctctacttctggaaat
ctgtctcatgtgtcaaattgttccacatctcattcttcacagcatagtgaggtggtcaat
atcaataatttaagtgccagtttaatacctgtagatagtaatatggaaggaagaagttca
gcaatatctagtcgaaaccttgaaaagatggtaaatgatcgtgcggatttggatagaact
tctgaagttagagagaggcaatttggaatgttgcaaggcaatggatctaaagttgagatg
cacaattctttaaaagcaggtgaaagcagtatgatctccaatatcttgtctctggatctt
gatttgtggagtgactcattgtcctcacctcagcatttggctaatcttttgggtgagtca
gacaagcacgaaggttctgttagatcttcgagttaccgaaaagttcaaaacagcaaccag
tccaggttctcttttgccagacaagaagaatcaattactcatgcatttgatgtcaaccca
ccttttactatcactgagcagatgcctagaaacagatctcttgatgaagattttggtaaa
aattgtcggtcatactcacataatcctgtggttgttaatgggtctctttcgagatttgag
gaggtaggcaatcgtgctgcctctcaatcagttctctcatctggttcaagatctcaaatt
tctgctccacctggtttctctgttcccaataaagcacctccaccagggttttcttctcat
gagagaactgataggaattttgacacttatttggggaaccatttgcctgacatcaacttg
ttgagaaattcatatcagacacaaccaaatgcgagtgtcaacagtacaggagacattgaa
ttcatggatcctgctattttagctgttggcagagggacgattcaaggtggtttcaatagc
ccatcattcgatcttgggtcattatctcaacaactgaatactttggacagtgatgctgga
cataatttattaatgaaaagatcttttcctgcacactcgaatttaagatatgagacaagt
gcaggttatgcttctcttaataattcctttgacattgcttcgaggatttttgatcagtca
caaatgggaaatgtatcatcttacacgcagctttctctccaaaggagtatgtccaatggc
cgctggagtggtcggaacaccattcctggtggagatggtgtggttatggctgagttgctt
agaaatgagaggcttggaattaataagatctgcgacagtcttgagaatcagaagtattgc
atgcctagttcaggggatctgtgtaacagatcatttgggatgtga
DBGET
integrated database retrieval system
