Eucalyptus grandis (rose gum): 104435922
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Entry
104435922 CDS
T03547
Name
(RefSeq) DNA ligase 4 isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
egr
Eucalyptus grandis (rose gum)
Pathway
egr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
egr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
104435922
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
egr03400
]
104435922
Enzymes [BR:
egr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
104435922
DNA repair and recombination proteins [BR:
egr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
104435922
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
BRCT
DNA_ligase_A_C
PTCB-BRCT
RNA_ligase
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
104435922
NCBI-ProteinID:
XP_010046928
LinkDB
All DBs
Position
3:complement(426308..441964)
Genome browser
AA seq
1169 aa
AA seq
DB search
MSGDTKLSVLVSLFNWMQKSKSAAQKRSKFRKFLDTFCKPSDYFSAIRLILPSLDRERGT
YGLKESVLATCLVDALGMSRDSEDALRLFNWRRGGPKSGANAGNFALVAAEVLQRRQGMA
SGGLTIRELNDLLDRLASSENRAEKTSVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKS
IFHEFHPDAEDLFNVTCDLKLVCEKLKDRGQRHKRQDIEVGKAVRPQLAMRIGNAAAAWK
KLHGKEVVVECKFDGDRIQVHKNGSEIHFFSRNFLDHTEYGPGMLDIIINNIVVDRCILD
GEMLVWDKSANRFAEFGSNQEIAKAARDGLDNDRQLCYVAFDILYAGDTSVIHQTLKERQ
ELLRKVVKPLKGRLEILVPEDSLNSQRPRGEPCWTLIAHSMDDVERFFKETIENRDEGIV
LKDLSSKWEPGDRSGKWLKLKPEYIHASTDLDVLIIGGYYGSGRRGGEVAQFLVGLAERP
PANTYPRRFISFCRVGTGLSDEELEAVVTKLKPYFRKYEFPKQSPPSFYQVTNHSKERPD
VWVESPEKSIILSITSDIRTISSEVFAAPYSLRFPRIDRVRLDKAWHECLDVQSFVELVH
SSNGTTQGGMEYKGQLASGLKRKRSSDKGKGEKRNLTIVPSHFMRTDISGLKGETQIFSN
LMFYFVNVPPNLSLDALHKMVVENGGTFSMNLNDSVTHCIAAESKGIKFQVAKQRKDIIH
YSWLLDSCSQKKLLPLQPRYFLFLSEISKKKLQEEIDEFSDSYYWNLGLADIKQLLNNVE
RSEDPHRVNYYKKKFCPSEKWSRFHGCCIHFYSSMKALKPEWDLFLRLMQRRLELEVLWC
GGEVSNYLGNATHVVVVSEPGTSVDIDVILRSLKAPEKRLLRKKRLHVVDFKWLEDCMER
GEKLPEDPYYLKTTWTEESDTAWIEESDMGVCKHEASQENSVSTLPKEEERLSCFVEAVV
DVKGKAASEDQTGGKRRGRPAIINRNRGKISSNQAARKRTRLAKKPAKTSGNESDGSSSA
AETAHADTKNIKDNRIHETLKDEMAESPDNVEKEISEFLPGGRTEESGNADPREGMSSDG
QKMEVGAKHDDQCIGKIEIRSDPVEAMLLDMIPSLGMRKVETSDQSVEREKTADQSVERE
KPLVDPVEQPQKKKKVSYKDVASELLKDW
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgtccggcgacaccaagctcagcgtcctcgtcagcctcttcaactggatgcagaagagc
aagtccgccgcccagaagcgctccaagttccgcaagttcctcgacaccttctgcaagccc
agcgactacttcagcgccatccgcctgatcctcccctcgctcgaccgcgagcgcggcacc
tacggcctcaaggagtccgtcctcgccacctgcctcgtcgacgccctcggcatgtcccgg
gactccgaggacgccctccgcctcttcaactggcgccgcggaggccccaagtccggcgcc
aatgctggcaatttcgctcttgtcgctgccgaggtgctgcagcgtaggcaaggaatggca
tctgggggcctaaccataagggaattaaatgatttgcttgaccgtttggcatcaagtgaa
aacagggcagaaaagacttctgttctttctactttaataaagaagacaaatgcccaggag
atgaagtggattatcatgataattcttaaagatctgaagttaggcatcagtgaaaagagc
atatttcacgaatttcatccagatgctgaggatttgttcaatgtcacgtgtgatttgaaa
ttggtatgtgaaaagcttaaagatcgtggccaacggcataagcgccaggacatagaagtt
ggcaaagctgttcgtcctcaacttgcaatgagaattggcaatgcagctgctgcatggaaa
aagcttcatggaaaggaagtggttgtggagtgcaaatttgatggtgaccgcatccaagtt
cacaagaatggatctgagatacattttttctccagaaattttctggatcacacagaatat
ggaccaggaatgttggacatcataatcaataatattgtggttgatagatgcatcctcgat
ggtgagatgctggtttgggacaagtctgcgaatcgttttgccgagtttggctcaaatcag
gaaatagcaaaggcagcaagggatgggcttgacaatgatagacagttgtgctatgttgca
tttgacatcctgtatgctggggataccagtgttattcaccaaactttgaaggaaagacag
gagcttctccgaaaagttgtgaagcctttgaagggtcgtttggagatcttggtacctgag
gatagcctcaacagtcagcgtccaaggggggagccttgttggactcttatcgcgcattct
atggatgatgtcgagaggtttttcaaagaaacaattgagaacagagatgaaggaattgtc
ttgaaagatctcagttccaaatgggagccaggtgatcggagtggaaagtggttaaagctg
aagccagagtatattcatgctagtacggatttggatgttcttatcataggaggatactat
ggatctgggcgtcgtggaggggaggtggctcaatttttggttggtcttgctgagcgtcca
cctgcaaacacatatcctagacgattcatttccttttgtagagtgggtaccggactttct
gatgaggaactcgaggctgttgtcaccaaattaaagccatactttaggaagtatgaattc
cctaagcagtcaccaccaagtttttatcaagtgacaaaccattcaaaggaaaggccagat
gtctgggtcgagagccctgagaaatccattatactttctataaccagtgacatccggact
ataagttctgaggtgtttgctgctccatacagtctaagatttccacgaatcgacagagtt
agattggataaggcttggcatgagtgtctcgatgtccaatcttttgtggaactggttcat
tctagcaatggtactacacaggggggaatggagtacaaaggccagctggcaagtgggcta
aagcgtaagaggtcttctgacaaaggaaagggagagaaaaggaacttgaccattgtacca
tctcatttcatgcgaactgacatttctggccttaaaggggaaactcagatattttcaaat
ttgatgttctactttgtaaatgttcctccgaacctttctcttgatgcgttgcataaaatg
gttgttgagaatggtggcactttctctatgaatctgaatgattcagttacccactgtatt
gcagctgaaagcaaggggatcaaatttcaggtagcaaaacagagaaaagatattatccat
tactcatggctccttgattcttgttcacaaaaaaagcttcttcctctgcagccaaggtac
tttctcttcctatctgagatatcaaaaaagaagttgcaagaagaaatcgatgagttttct
gactcttactattggaatcttggactcgcagatatcaaacaacttttaaataatgtggaa
agatcagaagaccctcaccgtgtcaattattacaagaaaaaattctgcccatcagagaag
tggtcacgctttcacggatgctgcattcacttctattcttcaatgaaggcattaaaaccg
gaatgggatctcttcttgaggctaatgcaaaggaggttggaactggaagtattgtggtgc
ggtggcgaagtcagcaattatctcggaaatgctactcatgtggttgtagtgtcagaacct
ggaacttcagttgatattgatgtgatcttgagaagcttaaaggcaccagagaaacgtctt
ctaagaaagaagagattgcatgtagttgatttcaaatggttggaagactgcatggaaaga
ggcgagaaattgcctgaggatccgtattacttgaaaactacttggacagaagagtcagac
actgcttggatagaagagtcagacatgggagtctgcaaacatgaggctagtcaagagaac
tcagtttccaccttgcccaaagaggaggaacggttatcgtgttttgtggaggcggtggta
gatgtgaaaggtaaagcagcttcagaagaccagactggtggcaaaagaagaggaagacct
gctatcatcaacagaaatagaggtaaaattagtagcaatcaagctgcgaggaagcgaaca
cgtctggcaaagaaacctgcaaaaacatcgggaaatgaatctgatggaagcagttctgct
gctgaaacagcgcacgcagatacgaaaaacataaaagacaatagaattcatgaaacttta
aaggatgagatggctgaaagtccagacaatgtggaaaaggagatttcagagtttttacca
ggaggcaggacagaagagtcagggaatgcagatccacgggaaggaatgtccagcgatggt
cagaaaatggaagttggggcgaagcatgatgaccaatgcatcgggaagattgagattagg
agtgacccagttgaagctatgctacttgacatgatcccgagccttggaatgagaaaagtg
gagacaagcgatcaatctgtcgaaagggagaagacagccgatcagtccgtcgaaagggag
aagccgctggttgatccagtcgagcagcctcagaagaaaaagaaagtaagctataaggat
gttgccagtgagcttcttaaggattggtag
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integrated database retrieval system
