Eucalyptus grandis (rose gum): 104441387
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Entry
104441387 CDS
T03547
Name
(RefSeq) polyadenylation and cleavage factor homolog 4
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
egr
Eucalyptus grandis (rose gum)
Pathway
egr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
egr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104441387
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
egr03021
]
104441387
03019 Messenger RNA biogenesis [BR:
egr03019
]
104441387
Transcription machinery [BR:
egr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
104441387
Messenger RNA biogenesis [BR:
egr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
104441387
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
104441387
NCBI-ProteinID:
XP_010052824
UniProt:
A0A059CFE8
LinkDB
All DBs
Position
4:complement(16967820..16973678)
Genome browser
AA seq
981 aa
AA seq
DB search
MDTERITPISRENPRGFSFKPAPSDVVPKPLPPLTVLDRFRALLKQRDDELRAADDGAAA
AAASSTGEVVAVYEAVLSELIFNSKPVITDLTIIAGEQREHAEGIADAICSRIIEVPVEQ
KLPSLYLLDSIVKNIGRVYVRHFATRLPEVFCEAYRQVDPNQYGAMRHLFGTWSSVFPPP
VLRKIESELQFSSSASDQRASLSSLRASESPRPSHGIHVNPKYVRQLEHSSAESVGGEAS
KLRSTENNIRSSYPPRANKLQPSPNAAFTRTLSPLRRGTDTTFSTEIDEFTADSTSRKFD
RASPSHPASEYDLARAVGREELSNDWQRNQFFDVGRKRLGNSSAINLTNGRSHMNPRALI
DAYGDDKRKSTSIHKPSPIEHSDIRGKVAPMSWQDTEEQEFNWEDMNRSLADRGRSNNIV
RSSVQPYGGSRSRLGGRFSGLPPATARDDPSIYIGDASITSGPGSVEKLPRLQSETNKIP
GSRYSEKPLNLSTHTSQQFLNRGRVSSLQTMSSAGGMPVGDEKLIPGYRKLPVAEQVDRT
IPPRMDSSTFESTYPANLSTSTGTWPAINVHKSNSLPVRPVLPRQQQSTGSVIISGPSTA
ANQGANRPLLMVEHQLDKLDGKELPSTTKISVPNQHGGFMPLNRQKNQNTPFQPQFQPIQ
EAQGKVLPSSAATASSHMVAPGLNYGFTGQGHRPILSSGQGNILQIAQSSIPIQNIPNNM
MQFQGGSLPPLPPGPPPVPSQSLPMSQIPTAALPNNLGGNAYHGLINSLMARGVITLTNQ
TPVQDSVGVDFNMDLLKVRHDSAIRALYDDLPRQCTTCGLRFKFQEEHSSHMDWHVTKNR
MSKSRKQKPSRKWFVSTSMWLSGAEALGAEAVPGFLPAESTEEKKSDEEMAVPADEDQNA
CALCGEPFDDFYSDETEEWMYKGAVYMNAPDGSTAGMERSQLGPIVHAKCRSESNEVSPG
NFSRDEGGNAEEGSQRKRLRS
NT seq
2946 nt
NT seq
+upstream
nt +downstream
nt
atggacaccgagagaatcaccccgatctcgcgagaaaaccctaggggcttctccttcaag
cccgcgcccagcgacgtcgtcccgaagccgctgcccccgctgacggtcctggaccggttc
cgggccctgctgaagcagcgggacgacgagttgagggccgccgacgacggggcggcggcg
gcggcggcgtccagcacgggggaggtggtggccgtctacgaggcggtcctgtcggagctg
atattcaattcgaagccagtcatcaccgatctgacgatcatagccggggagcagcgggag
cacgccgagggcattgcggacgcgatttgttctcggattattgaggtccctgtcgagcaa
aaattaccgtcactatatctactggatagcattgttaagaatattgggagagtttatgtt
aggcactttgcgacccggctacctgaggttttctgcgaggcttacagacaagttgaccct
aaccaatatggggcaatgcgccacctttttggcacatggtcatctgtttttccaccaccg
gtccttcgcaaaattgagtcggaactgcaattttcttcttcagctagtgatcaacgggct
agcctgtcttccttgagggcttcagaatctcctcggccatctcatggtattcatgtcaat
ccaaagtatgtgcgtcagttggaacattcatctgctgaaagtgttggaggtgaagcttct
aagttgaggtcaacagaaaacaatattcgttcatcctatcccccgagggcaaataagctt
caaccatctcccaatgctgcttttacaaggactttgtcccctctaagaagaggaactgat
acgactttttctacagaaatagatgaatttactgctgatagcacatcgaggaaatttgac
agggcttctccatctcaccctgcctctgaatatgaccttgcaagagcagtaggtagagag
gagctgtcaaatgattggcaaaggaatcaattttttgatgttggtcgaaagcgtttggga
aattcttctgcaatcaatctcaccaatggacgcagtcatatgaatcctagagcattgatt
gatgcatatggagatgacaagaggaaaagtacctccatccataagcccagcccaattgag
cactcggacatcagaggaaaggtggctcccatgtcatggcaagatacagaagagcaggag
ttcaattgggaagatatgaaccgcagtttggcagatcgtggtagaagtaacaatatagtg
cgatcatctgttcaaccttacggcggctcaaggtctaggttgggaggcaggttttctggt
ctgcctcctgcaacagcacgagatgatccctctatatatattggagatgcctctattacg
tctggtcctggatcagttgaaaaattgcctagacttcaaagcgagacaaataaaattcct
ggttcccgctattctgagaaaccattgaatttgtcaacacacacttcccaacaattcctc
aatagggggagagtttccagtttacagacaatgtcttcagctggaggtatgccagtaggt
gatgagaaactgattcctggttacagaaagcttcctgttgctgaacaagttgacaggact
atcccaccaagaatggattcttcgacttttgaatccacttaccccgccaatctttccaca
tcaactggcacttggcctgcaattaatgtgcataagtctaactcccttcctgttcgacct
gtacttccccggcagcagcagtcgactggctcggtcattatttcgggtcctagtactgct
gcaaatcaaggtgcaaatcgccctttgcttatggttgaacaccaacttgataagttggac
ggcaaggagctaccttctactacgaagatatcagtacccaatcagcatggtgggttcatg
ccactgaatcggcaaaagaaccaaaatactccatttcaacctcagtttcaacctatacag
gaagctcaaggaaaagttctcccatcttctgcagcaactgcatcatctcatatggtagca
cctggattaaattatgggtttacaggacaaggtcaccgtccaattctatcctcagggcaa
ggaaatattttgcaaatagcgcaatcttctataccaatccaaaacatcccaaacaacatg
atgcaatttcagggtggatccttgcctcccctgcctccaggtcctcctcctgtcccttcg
cagtcattaccaatgtcacaaattcccactgcagctctacctaataatttaggtggaaat
gcatatcatggtttaatcaattctctcatggctcgaggagtgatcacactaacgaatcag
acccctgtgcaggattctgttggtgttgattttaacatggaccttcttaaagttcgtcac
gattctgcaataagagccctatatgatgatctcccaagacaatgtacaacatgtggcttg
aggtttaagtttcaagaagagcacagtagccatatggattggcatgtgaccaagaaccga
atgtctaagagtcgcaagcagaaaccttcacggaaatggtttgtaagtacgagcatgtgg
ctcagtggtgcggaggcattgggagctgaggcagttcctgggtttttgcctgctgagagt
actgaagaaaagaagagcgatgaagaaatggcagttcctgctgatgaagatcaaaatgca
tgtgcgttgtgtggggaaccttttgatgatttctatagtgatgagacagaagaatggatg
tataaaggagctgtatacatgaatgcaccagatggttcaactgctggaatggaaaggtct
cagttaggtcctattgtacatgctaaatgccggtcggaatctaatgaagtatcccctgga
aatttttccagagatgaagggggaaacgccgaagagggtagtcaaagaaaacgattgcgg
agttaa
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