Elaeis guineensis (African oil palm): 105038521
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Entry
105038521 CDS
T03921
Name
(RefSeq) regulator of nonsense transcripts UPF3-like
KO
K14328
regulator of nonsense transcripts 3
Organism
egu
Elaeis guineensis (African oil palm)
Pathway
egu03013
Nucleocytoplasmic transport
egu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
egu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
105038521
03015 mRNA surveillance pathway
105038521
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
egu03019
]
105038521
Messenger RNA biogenesis [BR:
egu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
105038521
mRNA cycle factors
P-body specific factors
105038521
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Motif
Other DBs
NCBI-GeneID:
105038521
NCBI-ProteinID:
XP_010912655
UniProt:
A0A6J0PF46
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Position
2:complement(27379041..27388676)
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AA seq
562 aa
AA seq
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MKGPFDRTKIVLRHLPPSISQSALMEQIGERFAGRYDWVCFRPGKASPKNQRYSRSYLSF
KRPEDVVEFAEFFDGHIFVNEKGAQFKVLVEYAPSQHVPKPSSKKDGREGTISKDPEYLE
FLEHLSKPEHLPSAEIQLERKEAERAGAQKEMPIVTPLMDFVRQKRAAKNGAQRLAGNGK
LSKRAMGVMKRGSEKRRLSTSMYVLRDGRKNGSSKDKPTYILVPRREEQQLPDKSFAVAS
ASGAEALEDEFGTVSNGLISGSVEARKSKIVLLKGKEREGSHASGGFVQLQNVTTTARSS
PTSTSKQNQRLEAGGRIIRSILSNEVRQSNMASSQPEQHMQTTNLEKDKRPPRPPSTRSI
SKDHVCGSSSPVSISDGDDKRYIDDMVAMSYKQGSVSIVDKHEKRTRNKDRPDWGVWAPL
CRSDRSQSNDGTFSSSSEAAQILVDSIENVSISQQAAGNKVADDNVVVRNAHDMPIGQGE
RKSDTPSASRTEEMKSHGGGRVSLSMLENGSHRHVGRRGPARASKDAESSSSISEGKHSK
RGSSSYGSHERQVWVQKSGSAP
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgaagggcccgtttgatcggacgaagatcgtgctccggcatctgccgccgtcgatctcg
cagtcggcgctgatggagcagatcggcgagaggttcgcggggcgatacgattgggtgtgc
tttcgcccgggcaaggccagtcccaaaaatcagagatattctcgatcctaccttagtttc
aaacgaccagaagatgtggttgagtttgctgagttctttgatgggcacatctttgtcaat
gagaagggtgctcagtttaaggtacttgtagaatatgcaccttcacaacatgttccaaag
ccatcgtccaagaaggatggccgtgaagggactatatccaaggatcctgaatatctggag
tttctcgagcatctttcaaagcctgagcatcttcctagtgccgagattcagttggaaaga
aaagaagcagaaagagcaggtgctcaaaaggagatgcccatagtcacacctttgatggat
tttgttcggcaaaaaagagctgccaagaatggcgctcagagattagctggtaatggaaaa
cttagcaaaagagctatgggagttatgaagcggggttcagagaagcgaaggttgtccact
tcaatgtatgtattaagggatggtagaaagaatggaagttccaaagacaaaccaacatac
attttagtgccgaggagagaggagcagcagcttccagacaaatcttttgccgtagcttct
gcaagtggtgcagaagcattagaagatgaatttggaactgtctcgaatggattaatctct
ggatctgttgaagctcggaagagcaaaattgtgcttttgaaaggaaaggagagagaaggt
tctcatgcctctggtggctttgtgcagctgcagaatgtaacaactacagcaagaagctcg
cctacctcgacttctaaacagaaccagcgacttgaggctggtgggagaattattagaagc
atactttctaatgaagtgcgtcagtcaaatatggcttcctcccagcctgagcagcatatg
cagacaacaaacttggagaaggacaagcgtccacctcgaccccccagcacacgctccatt
tcaaaggatcatgtctgtggtagctcttcacctgtatctatttctgatggtgatgacaaa
agatatatagatgatatggttgctatgagctacaagcagggttctgtatccattgttgac
aagcatgaaaagcgtactaggaataaggatagacctgattggggtgtttgggctcccctt
tgtcgctcggacagatctcaatcaaatgatggaactttttcttcatcttctgaagctgca
caaattttggtggattctatagaaaatgtctctatttctcaacaagcagctggtaataaa
gtagcagatgataatgtggtggttcggaatgcccatgacatgccaataggtcaaggggag
agaaaatctgatacacctagtgcaagcagaactgaagaaatgaaaagtcatggaggtgga
cgtgtcagtctttctatgttagaaaatggttcacataggcacgttggccgccgaggacca
gcacgtgcttcgaaggatgcggagagctcttcgagtatatctgaggggaaacattccaag
aggggttcttccagctatggttcccatgagagacaagtatgggttcaaaagtcaggctct
gctccgtaa
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