Egretta garzetta (little egret): 104129801
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Entry
104129801 CDS
T05152
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
egz
Egretta garzetta (little egret)
Pathway
egz03013
Nucleocytoplasmic transport
egz03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
egz00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104129801 (UPF1)
03015 mRNA surveillance pathway
104129801 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
egz03019
]
104129801 (UPF1)
Enzymes [BR:
egz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
104129801 (UPF1)
5.6.2.5 RNA 5'-3' helicase
104129801 (UPF1)
Messenger RNA biogenesis [BR:
egz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
104129801 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
104129801 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
104129801
NCBI-ProteinID:
XP_009641061
LinkDB
All DBs
Position
Unknown
AA seq
1089 aa
AA seq
DB search
MRGKDLVMMLGSGHTLGRAVMDKAHGVNVLDELVECLKEAGTELVFQVNGPDGILQNGAV
DDNVAKTSQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSKKWFCNGRG
NTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKADSVVVLLC
RQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQINKLEELW
KENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLKESQTQDNI
TVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGD
EIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHE
VEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHL
ARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMD
SMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQ
FRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLV
VLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFY
VTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQF
SGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYG
VIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARF
MTTAMYDAREAIIPGSVYDRSSQGRPSNMYFQTHDQIGMISAGPSHVTAMNIPIPFNLVM
PPMPPPGYFGQANGPAAGRGAPKGKTGRGGRQKNRFGIPGTSQSNLPNSQASQDVVSQPF
SQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQH
GGVTGLSQY
NT seq
3270 nt
NT seq
+upstream
nt +downstream
nt
atgagaggcaaggacttagttatgatgctaggaagcggtcacacgctcggcagggctgtg
atggacaaggcgcacggtgtaaatgtgttagatgagctggttgagtgcttgaaggaggct
ggcactgagcttgtatttcaggttaatggacctgatggcattctgcagaatggagctgtg
gatgataacgtggctaaaaccagccagcttctggcagaactgaatttcgaagaagatgaa
gaagatacctattacacaaaggatcttcctgtgcatgcttgcagttactgtggtatccat
gaccctgcctgtgtggtttactgtaacaccagcaaaaagtggttctgtaatggacgtgga
aatacatctggcagccacattgttaatcatcttgtgagagccaagtgcaaagaggtgact
ctccataaagatggacctctaggagagactgtcttggaatgttataactgtggatgtcgt
aatgtgtttctccttggctttattccagctaaggcagactctgtggttgttttgctgtgc
aggcagccatgtgccagtcagagcagtttaaaggatattaactgggacagttcacagtgg
cagcctcttatccaagatcgctgtttcctttcatggctggtaaagattccatctgaacag
gaacagttgagagcacgtcagattacagctcaacagatcaacaaactggaagaactttgg
aaggaaaatccatctgcaacccttgaggacttagaaaagcctggtgttgatgaagaaccg
cagcatgtcctgcttagatatgaagatgcttatcagtaccaaaatatatttgggcctcta
gtcaagcttgaggcagactatgacaagaaactcaaggagtctcagacccaagataacatc
acggtcagatgggacctgggcttgaacaagaaaagaattgcttatttcactttgccaaag
actgattcagatatgcgtcttatgcaaggagatgagatctgcttgaggtataagggagac
ctggctcctttatggaaaggaattggtcatgttatcaaagttcctgataattatggtgat
gagatagccatcgagctgaggagcagcgttggagcgcctgtggaagttactcataacttc
caagtggattttgtatggaagtctacttcatttgacagaatgcagagtgctttaaaaaca
tttgctgtggatgagacttcagtgtctgggtacatctatcacaaactgttaggtcacgag
gtagaagatgtaattattaaatgccaattgccaaagcgctttacagcacaaggacttcct
gatctcaaccattctcaggtttatgctgtgaagactgtcctgcagcgtcctctgagcctt
attcagggtccccctggtaccggaaaaacagtgacatcagccacaatcgtctatcatctg
gctagacagggcaatgggcctgtgttagtctgtgctccgagtaatatagctgtagatcag
ctgactgaaaagatccatcaaactggactgaaagtggttcgtctgtgtgctaagagtcgt
gaggcaattgactctcctgtgtccttcctggcattgcataaccagatcagaaacatggat
agcatgccagagcttcaaaaactgcagcagcttaaagatgaaactggagaactgtcatct
gccgatgagaaacgttaccgtgcgctgaaacgaacagcagagcgtgaattacttatgaat
gcagatgtgatctgttgcacgtgtgtgggagctggtgatccaaggcttgcaaaaatgcag
ttccgctccattctgatcgatgaaagcacacaggctaccgagccagagtgcatggtgcca
gttgtcctgggagcaaagcagcttattcttgtgggtgaccactgccagcttggtcctgtt
gtgatgtgtaaaaaagctgccaaggctggcctgtctcagtctctcttcgagaggcttgtg
gtgctggggattcggccgattcgcctgcaagtgcagtatcgcatgcatcctgcactcagc
gcttttccatccaatatcttctatgagggttcactccagaatggtgttactgcagcagac
cgtgtgaaaaaaggttttgatttccagtggccacagccagataagccaatgtttttctat
gttacacaaggacaggaagaaattgccagctcaggcacctcttacttgaacaggacggaa
gctgccaatgtggagaagataactacaaagctattgaaagctggtgccaaaccagatcag
attggcattattactccttatgaaggtcaacgatcctatctggtgcagtacatgcaattc
agtggttccttgcatacaaagctctaccaggaagtggaaattgcaagtgtggatgccttc
cagggacgagagaaggactttattatcctctcttgtgtgagggccaatgaacaccaagga
atagggtttctgaatgaccccaggcgtcttaacgtagctcttacaagagcaaggtatgga
gtgattattgttgggaacccaaaagcgctgtccaaacaaccactttggaatcacctgttg
aattactacaaggagcagaaggttctggtggagggaccactgaataacctccgggaaagc
ctcatgcagttcagcaagccccggaaactggtcaataccatcaacccaggtgcccgtttc
atgactactgccatgtatgatgcacgtgaggctattattccaggatctgtctatgaccgg
agcagtcaagggcgcccatccaacatgtacttccaaacccatgaccagatcgggatgata
agtgctggccccagccatgtcactgctatgaacattcctatccccttcaacctcgtgatg
ccaccgatgccaccaccgggatactttggccaggctaacggaccagccgcaggacgtggg
gcgccaaaaggaaagactggtcgtggtgggcgccagaaaaatcgttttgggattcctgga
actagtcagtcaaaccttccaaatagtcaagcgagccaagatgtggtgtcccagcctttc
tcccagggtccactgactcaggggtatatctccatgagtcagccatcgcagatgagtcag
cctgggctctcccaaccagaattatcacaggacagttaccttggtgatgagtttaaatct
cagattgacgtggcgctgtcacaggactctacttaccagggtgaacgtgcatatcaacat
ggcggagtgacgggactgtcacagtattag
DBGET
integrated database retrieval system
