Ethanoligenens harbinense: Ethha_2080
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Entry
Ethha_2080 CDS
T01384
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
eha
Ethanoligenens harbinense
Pathway
eha03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
eha00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Ethha_2080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
eha03400
]
Ethha_2080
Enzymes [BR:
eha01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Ethha_2080
DNA repair and recombination proteins [BR:
eha03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Ethha_2080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
CarD_TRCF_RID
UvrB_inter
Helicase_C
ResIII
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ADU27597
UniProt:
E6U3J7
LinkDB
All DBs
Position
complement(2225216..2228755)
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AA seq
1179 aa
AA seq
DB search
MQFLADIFRELPAYRDLEASVKAGVLPAVVTGLSGVHKAHLIYALCSHTGRRALLLAADE
QEAARMRDDLEQFFGGGVLVCPARDLTLRPVESVSREFEHERLRVMGRMALGDYRVVVAC
ADAAMQLTMPKEVYRARSLPVESGKMLSPERAVDALLAAGYVRTEQVEGMGQFARRGGIV
DFFPPQEETPVRVEFWGDEPDTVSHFDPETQRRTEPAEGVCITPAVEVGFAPQDLQSAIR
KLLDGTAGKARGSFEKDLERLESGVAVAATDRYLSLCYDRPVSLFDYADDALLFVSETAR
VRERAKNTLWQAGEDVSALLADGILAPGLDTYYLDWPQVLQQMDRHDTVLLDTFARATYE
VAARGRLAIVSKQFSLWSGGLAALKEDLVPALDVGGRAVVLAGTGKNSENLARELAKEGI
SAVSAQGKDAALPARGGVLTLPGRLSAGFSYPDIGFSLFSYGGQTQTTGQRLHRKRKNKR
AGERIRSLAELTPGDYVVHAAHGIGVYEGIHKLTVQGVVKDYIKIRYAGRDTLYVPVTQL
DLVSKYIGTHEDGHLRLNKMGGTEWQKAKNRVRAAVKDMAKELIALYAARQQVKGITFQP
DDAMQREFEDRFEFEETDDQLRCVEEIKGDMQRAFPMDRLLCGDVGFGKTEVALRAAFKC
MENGKQCAILVPTTILAWQHFQTITRRMEGFPVKIGLLSRFRTPHEQQQTLRDLARGSVD
IVVGTHRLVQKDVRFKSLGLLIVDEEQRFGVAQKEKLKELFKNVDVLTLSATPIPRTLNM
AMSGIRDMSVIEEAPQDRHPVQTYVLEHDWGVLADAVRRELRRGGQVYYLHNRVESIEGT
AAKLHALVPDARVGIAHGKMDEETLSRVWEKLLGNELDVLVCTTIIETGVDVPNCNTLII
EDADHMGLSQLHQIRGRVGRSSRRAFAYFTFRRGKALSDIATKRLEAIREYTEFGAGFQI
ALRDLEIRGAGNILGSQQHGHMESVGYDMYLKLLSDAVLEEKGEKPVREEECMVDIQVSA
HIPESYITSAGQRLETYRRIADIRSAEDESDVLDELIDRYGEPPAAVRSLVDVALLRNTA
ASLGIREIAQRENVLMLYAAQFDMQAVSRLVGALRGRVMVNAGQKPYISVKLKAGQSPVD
GIREALRALLSLPDELAEKKPADGAAHRRRATVKTTGGI
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
ttgcagtttttagcggatattttccgggaactgcctgcctaccgcgacctggaagcgtcg
gtgaaagccggtgtgcttccggctgtggtgacgggcctttccggcgtgcataaagcgcac
ctcatttatgcgctttgcagtcataccgggcggcgtgcgctgctgctggctgccgatgag
caggaggccgcgcgcatgcgcgacgatctggaacagtttttcggcggcggcgtgctggtc
tgccccgcgcgggacctcacgctgcggccggtggagagcgtttccagggaatttgagcat
gagcgcctgcgggtgatggggcggatggcattgggcgattatcgtgtcgttgtcgcctgc
gcggatgccgccatgcagctcaccatgcccaaagaggtttaccgtgcacgcagcttgccg
gtggagagcggcaaaatgctctcgcccgagcgggcggtggatgccctgctcgcggcgggc
tatgtgcgtaccgagcaggtcgagggcatgggacagtttgcccggcgcggcggtattgta
gatttctttccaccgcaggaggaaacgcccgtgcgggtggaattctggggggatgagccg
gataccgtctctcatttcgaccccgagacccagcgccgcaccgagcctgcggaaggggtg
tgcatcaccccggccgtagaggtcggattcgcaccgcaggatctgcaaagcgccatccgc
aaattgctcgacggcacggccggaaaggcgcgcggcagttttgaaaaggacttggaacgg
ctggaaagcggagtcgccgtggcagcgaccgaccgctatctgtcgttgtgctatgaccgc
ccggtttcgctgttcgattacgccgacgatgcgctgctgtttgtgagcgagacggcgcgc
gtgcgcgagcgcgccaaaaacacgctctggcaggcgggcgaggatgtgtcggctttgctg
gcggacggtatcctcgcgccggggctggacacctattatctggactggccgcaggtgctg
cagcagatggaccggcatgacacggtgctgctggataccttcgcgcgcgcaacctatgaa
gtggcggcgcgtgggcggctggccatcgtttccaagcaattctcactctggagcggcggc
ctggccgcgctcaaggaagacttggttcccgcgctggacgtgggcgggcgagccgtggtg
ctggcaggaacgggcaaaaacagtgaaaaccttgccagagaactggccaaagagggtatt
tccgccgtctccgcccaggggaaggacgccgctctgcccgcgcggggcggcgtgctgacg
ctgccgggcaggctttctgccggattttcttacccggatatcgggttttcactgttcagc
tacggtgggcagacacagacgaccgggcagcgtctgcaccgcaaacgcaaaaataagcgc
gcgggcgagcgcatccgcagtctggccgaactgacaccgggcgattatgtggtgcatgcc
gcccatggtatcggcgtctacgagggcatccacaagctgacggtgcagggcgtggtcaag
gattacatcaagattcgctacgcgggccgggacacgctctatgtaccggtgacgcagctc
gatctggtttccaaatatatcggcacgcatgaggacggccatctccgtttgaacaagatg
ggcggcaccgaatggcagaaagccaaaaaccgtgtgcgcgccgccgtgaaggacatggcg
aaagagcttatcgccctgtatgcggcaaggcagcaggtcaagggcatcacgttccagccg
gacgacgcgatgcagcgcgaatttgaggaccggtttgagtttgaggagacggacgatcaa
ctgcgctgtgtggaggagatcaagggcgatatgcagcgcgcgtttccgatggatcggctg
ctctgcggcgacgtcggtttcggcaagaccgaggtggcactgcgggccgcgttcaaatgt
atggaaaacggcaaacagtgcgctattctggtacccaccaccatccttgcatggcagcac
tttcaaacgatcacccgccgcatggagggttttccggtgaagattggtctgctctcacgc
ttccgcacgccgcacgagcagcagcagaccctgcgtgatctggcgcgcggctcggtggat
attgtggtgggtacccaccgcctggtgcagaaagacgtgcggttcaagagcctgggtctg
ctcatcgtggatgaagaacagcgtttcggcgtggcgcagaaagagaagctgaaagaactg
ttcaaaaacgtagacgtgctcacactctccgccacgcccatcccgcgcacgctgaatatg
gccatgtccggcatccgtgatatgtcggtcattgaggaagcgccgcaggaccgccatcct
gtgcagacctatgtgctcgagcacgactggggcgtgctggcggacgcagtgcgccgtgaa
ctgcggcggggcgggcaggtctactacctgcacaaccgcgtggagagcatcgaggggacg
gcggccaagctgcacgcgctggtgcccgacgcgcgcgtgggtatcgcgcacggcaaaatg
gatgaggaaacgctctcccgcgtgtgggaaaaattgcttggcaacgagctggatgttctg
gtgtgcaccaccatcattgagaccggcgtggacgtgcccaactgcaacaccctgatcatc
gaggatgccgatcacatgggcttgtcgcagctgcaccagatccgcggacgggtgggccgc
tccagccgccgtgcattcgcctatttcactttccggcgcggcaaggcgctttcggatatc
gccaccaaacggctggaagccatccgcgaatacaccgagttcggcgcgggcttccagatc
gccctgcgtgacctggaaatccgtggcgcgggcaatatcctcggctcccaacagcatggg
cacatggaatcggtggggtatgacatgtacctcaagctgctcagcgacgcggtgctggaa
gagaagggcgagaagcccgtgcgcgaggaggaatgcatggtggatatccaagtgtctgcc
cacatccccgaaagctatatcaccagcgcggggcagcggctggagacctaccgccgcatc
gcagacatccgcagcgcggaggacgagagcgacgtgctggacgaattgatcgaccgctac
ggcgaaccgcctgccgctgtgcgcagcctggtggacgtggcgctgctgcgcaacacggcc
gcttcgctgggtatccgggagatcgcgcagcgggaaaacgtgctgatgctctatgccgcg
cagttcgatatgcaggcggtttcccgtctggttggtgcattgcgcggccgcgtgatggtc
aatgccggacagaagccttatatttccgtaaaactgaaagcggggcagtccccggtggac
ggtatccgcgaggcgctgcgcgcgcttttgtccctgccggatgagttggcggagaaaaaa
ccggccgacggcgcggcgcacaggcgcagagccaccgttaaaacgactggagggatatga
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