Candidatus Erwinia haradaeae: ERCIPSTX3056_425
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Entry
ERCIPSTX3056_425 CDS
T05981
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ehd
Candidatus Erwinia haradaeae
Pathway
ehd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ehd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ERCIPSTX3056_425 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ehd03021
]
ERCIPSTX3056_425 (rpoC)
03400 DNA repair and recombination proteins [BR:
ehd03400
]
ERCIPSTX3056_425 (rpoC)
Enzymes [BR:
ehd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ERCIPSTX3056_425 (rpoC)
Transcription machinery [BR:
ehd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ERCIPSTX3056_425 (rpoC)
DNA repair and recombination proteins [BR:
ehd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ERCIPSTX3056_425 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
VFP87120
UniProt:
A0A451DK84
LinkDB
All DBs
Position
1:681013..685239
Genome browser
AA seq
1408 aa
AA seq
DB search
MNDLMKLLKTQHHTEEFDAIKIALASPDTIRLWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPIAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYIVIESGMTSLEKYQLLTEEQYLDALEEFGDEFEATI
GAAAIQTLFKNINLDKECEQLHVELNESNSETKRKKLTKRIKLLEAFIQSGNKPEWMVLD
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPC
LHLHQCGLPKKMALELFKPFIYGTLELRGLATTIKAAKKMVEREESVVWDILEEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTMEAQLEA
RVLMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMILSSAKEAERMYRAD
LASLHARVKIRITEYEKNETEQWISKTNITNTTIGRAILWMIVPKGLPFSIVNQTLGKQA
ISQMLNTCYRILGLKPTVLFADQTMYTGFTYAARSGTSVGIDDMVIPQKKIDIIREAETE
VTEIQKQFQSGLVTVGERYNKVIDIWASANERVAQAMMENLSTEVVVNSDGISERQVSFN
NIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLIVTEDDCGTHEGILMTPLIEGGDVKDPLRERVL
GRVTSEDVLNPGTLAILLPRNTLLHEQECDILEAHSVDSVKVRSVVSCKTDFGVCAHCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVQNKGTLKL
INAKSVTNSEGKLVITSRNTELKVIDDFGRTKESYKIPYGTTMLKSTQEQVSAGETVAYW
DPHTMPVITEVSGFIRFTDIIDGLTITRQTDDLTGLSSLVVLDSAERTTAGKDLRPALKI
LDNNNHDVMNPGSEMPVQYFLPGKSIVQLEDGAKISAGDTLARVPQESVGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVITPINGNDPYEEMIPKWRQLNVFE
GERVERGDVVSDGPESPHDILRLRGVHAVTRYITNEVQEVYRLQGVKINDKHIEVIIRQM
LRKVTIQNVGDSDFLTGEQAEFSRVRIANRNLAENGKVKATFVRNLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKHDKLRGLKENVIVGRLIPAGTGYSYHKDRIRQHKSNEAST
LHNITADSASASLTELLNSGFNKFKLDS
NT seq
4227 nt
NT seq
+upstream
nt +downstream
nt
gtgaacgatttaatgaaattgctaaaaacacaacatcataccgaagaatttgatgcaatt
aaaattgctctggcatcgccagatacgattcgtttatggtcttttggtgaagttaaaaaa
ccagaaactatcaactatcgaacttttaagcctgaacgtgacggacttttttgtgcacga
atctttggccctgtcaaagactatgagtgcttatgcggtaaatataagcgtctgaaacat
cgcggtgtgatctgtgagaaatgcggtgttgaggtgacacaaactaaagtacgccgtgaa
agaatgggccatattgagctagcctctcctatcgcacacatctggttccttaaatcactc
ccatcacgcattggtttactgttagatatgccattgcgtgacatcgaaagggttttgtat
ttcgagtcttatattgttattgaaagtgggatgacgagtcttgagaaataccaactcctt
actgaggaacaataccttgatgccttagaagaatttggtgatgaatttgaggcaacaata
ggggcggcggctattcaaaccctctttaaaaatatcaacctagacaaagaatgtgaacag
ttacatgttgagttaaacgaatccaactctgagactaagcgcaaaaaactaactaagcgc
ataaaattacttgaagcatttatccaatctggtaacaaaccagaatggatggtccttgat
gttttgccagtcttaccacctgatttacgacctcttgtgccattagatggcggtcgtttt
gcaacatctgatctcaatgacttatatcgtcgtgtcattaatcgcaataaccgtttgaag
cgcttattagatctggcagcgccagacattatcgtacgtaatgaaaagcgcatgctacaa
gaggcagtagatgctttattagataatggccgtcgaggtcgtgcaattactggttctaat
aaacgacctttaaaatctttagcggatatgataaaaggcaaacaaggtcgattccgtcag
aatctgctaggtaaacgcgttgactattccggtcgatcagtcattactgtagggccatgc
ctgcatttacatcagtgtggtctaccgaaaaaaatggcactagagctctttaagccattt
atttatggcacactagaacttcgtggtttggcaacaaccattaaggcagcaaaaaaaatg
gttgaaagagaggaatcagttgtctgggacatattagaagaggttatccgtgaacatcca
gtgctactcaatcgggcccctactctacatcgtttaggcatccaagcgtttgagccagtg
cttatcgaaggaaaagcaatacagttacacccattggtctgtgcggcatataatgctgac
tttgatggtgatcaaatggccgttcatgttcctctgactatggaagctcagctagaggca
cgtgtactcatgatgtctactaataatatcttatcacctgcaaacggtgaacccattatt
gttccatctcaagacgtagtgctaggtttgtattacatgactcgagattgcgttaatgcc
aaaggagagggcatgatattaagtagcgcaaaagaagctgaacgaatgtatcgcgccgat
ctcgcctcactgcatgcgcgcgttaaaattcgtatcactgaatacgaaaaaaatgaaaca
gaacaatggatttctaagactaatatcactaatactaccattggtagagctattctatgg
atgatcgtgccaaaaggtttacctttctcgatagtaaatcagacactaggaaaacaagct
atttctcaaatgttaaatacttgttatcgtatcttaggattaaaaccaaccgtgctcttt
gctgatcaaaccatgtatactggatttacatatgcagcacgttctggtacatctgtaggt
attgatgatatggtcattcctcagaaaaaaatagatatcattcgtgaggcagaaacagaa
gtcacagagatacaaaaacaatttcagtcaggtttagtaacagttggagagcgatataat
aaagtgattgacatctgggcttcagcaaacgaacgcgttgctcaagctatgatggaaaac
ctatctacagaagttgtagtgaatagtgacggtatttcagaacgtcaagtttcttttaac
aatatttttatgatggctgactctggtgctagaggctctgcagcacaaattcgccaacta
gcaggcatgagggggttaatggcaaaaccagatggatctattattgaaacacctattacc
gcaaatttccgtgaaggattaaatgttcttcagtattttatttcaacacatggtgctcgt
aagggtctagcagataccgcgttaaaaaccgctaactcaggctatttaacccgtagacta
gtggatgtggcacaggatttaatcgttactgaagatgactgcggaacacacgaaggtatt
ttaatgacacctctgatcgaaggtggtgatgttaaagatccactgagagaacgtgttcta
ggtcgtgtaacatcagaggatgtccttaatccaggaactcttgcgatactattaccacgc
aacacacttctgcatgagcaagagtgcgatatattagaagcacactcagtagacagcgta
aaagtaagatcagtagtcagttgtaaaactgactttggcgtatgcgcgcactgctatggt
cgagatcttgcacggggtcatattatcaataaaggcgaagcaattggagttattgctgct
cagtctataggagagccaggtactcagttaacaatgcgtacctttcatattggtggagcg
gcatcacgcgcagcggcagagtctagcattcaggtccaaaataaagggacattaaaatta
attaacgctaaatcagttactaattctgaaggaaagctggtcattacctcacgcaacact
gaactaaaagtcatcgatgactttggacgtacaaaggaaagctataaaattccttacggg
actactatgctaaaaagcacgcaagaacaagtttccgccggagaaactgttgcttattgg
gatccacataccatgcctgtcattactgaagtcagcggttttatccggtttaccgacatc
attgatggtctaactataactcgtcagactgatgacttaactggcctttcttctctcgtg
gttcttgatagtgctgaaagaactactgctggcaaggatcttcgcccagccctcaaaata
ttagataacaataatcacgacgtcatgaatccaggctccgagatgcctgtacagtacttc
cttccaggaaaatccatcgttcaactagaagatggcgcaaaaattagtgctggtgataca
ctagcccgagttccgcaagaatctgtcggcaccaaagatattactggcggtctaccgcgc
gtagctgatctctttgaggcccgtcgccccaaagagccagctattttagctgaaattagc
ggtattatttcctttggtaaagaaacaaaaggaaagcgcagactggttattacaccaatt
aatggtaatgacccgtacgaagaaatgatcccaaaatggagacaactgaatgtatttgaa
ggtgaacgcgtagagcgcggggatgttgtctctgatggtcctgaatcaccgcatgatatt
cttcgcttacgcggtgtacatgccgtcactcgctatattaccaatgaagttcaagaagta
tatcgcttacagggtgtcaagattaatgataaacatatcgaagttatcattcgtcaaatg
ctacgtaaggtcaccattcaaaacgtaggagattctgactttctgacaggagaacaagct
gaattctctcgtgtaaggatcgctaaccgtaacttagcggaaaatggtaaggtcaaggca
acttttgttcgtaatcttctgggtatcaccaaagcctctttagcaactgaatcgtttatt
tctgcagcctcttttcaagaaacaacgcgcgtgctcactgaagcagcagttgcaggtaag
catgacaaactgcgcggcttaaaagagaatgttattgttggtagattaattccggctggt
actggttattcataccataaagatcgtattcgccaacataaatcaaatgaagcatctact
ttacataatattaccgctgattcagcttctgctagcttaacagaactactaaattctggt
tttaataaattcaaattagactcatga
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