Encephalitozoon hellem: EHEL_040820
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Entry
EHEL_040820 CDS
T02287
Name
(RefSeq) superfamily II RNA helicase
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
ehe
Encephalitozoon hellem
Pathway
ehe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ehe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EHEL_040820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ehe03019
]
EHEL_040820
03041 Spliceosome [BR:
ehe03041
]
EHEL_040820
03009 Ribosome biogenesis [BR:
ehe03009
]
EHEL_040820
03016 Transfer RNA biogenesis [BR:
ehe03016
]
EHEL_040820
Enzymes [BR:
ehe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
EHEL_040820
Messenger RNA biogenesis [BR:
ehe03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
EHEL_040820
Spliceosome [BR:
ehe03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
EHEL_040820
Complex C
U4/U6.U5 tri-SnRNP related factors
EHEL_040820
Ribosome biogenesis [BR:
ehe03009
]
Eukaryotic type
Pre-60S particles
Helicases
EHEL_040820
Transfer RNA biogenesis [BR:
ehe03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
EHEL_040820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
DEAD
Helicase_C
ResIII
MTR4-like_stalk
nSTAND3
ATPase_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
13467919
NCBI-ProteinID:
XP_003887114
LinkDB
All DBs
Position
IV:complement(100302..103103)
Genome browser
AA seq
933 aa
AA seq
DB search
MIDDKYFDILSESLQPQSIATPERLEKRTMVVDRMERNGTRHEAVVPVDAAYTPLPKEFA
APSAKSYLFELDDFQKISVCSLERDESVLVSAHTSSGKTVVAEYAIAMSLKNKQRVVYTS
PIKALSNQKYRELLSEFGDVGLMTGDVTINPAATCLVMTTEILRNMLYRGGEVVREIHWI
IFDEIHYMRDKERGVVWEETIILLPRHVRMVFLSATIPNALEFAEWICHIQSQVVHVVYT
EKRVTPLVHYFRSNRLYKIKDTKFHKSNFLSAMRSIQKRVVGPREVSEAIEDASLPVVVF
SFRRKDCEKFAMKLDKSYLRDSEAKMVETIFTNAIMSLRKEDREIPIIQNILPLLMRGIG
IHHSGLLPIIKEVVEILFQEGLLKVLFATETFSIGLNMPAKSVVFTALKKFDGESMRLVS
PGEYIQMSGRAGRRGIDSMGVVISIVSEPITYKEVGKLFSSSSDNLVSAFRLTYNMLLNL
MRVEGLDPLYLISRSFHHFQSYKKALAEEETLHLMHRQLESICPNRIASLYGRREQKRVE
RNKRLSEEFSKYLKKGRVIDLFVPRNGPSITIRNAIVSKVQEKVLCMVGTDEGVYMCGFP
LHYIDCVYANRVKLDIRVFTRNFEKITIEDSLDKEIREIEDEILSIDPKWSFDFCMICGK
TSMGCLASCSKELIGEDSVMIQVPENGKKHRESPKSQGCLDTNMNGEMGEARSYFMNEML
KQKYMDKLFELNSLKEIYHMKECKKMIEVLKRLEYCNDTDVLIKGRMACEISSGDELVLT
EMIFNGDFAGIPVEHFVPLLSCIVFEEWDSDNFVLSDENKLYYKLLSSSVEKVCNVLKSC
SLDVDPAAYLKRFSYELMDVVRMWVCGHTFVNICSKTNIFEGSIIRTFKRLEELLRQLSS
AARVIGNTELENMFALGISKIKRDIVFANSLYI
NT seq
2802 nt
NT seq
+upstream
nt +downstream
nt
atgatcgacgacaaatacttcgatatccttagcgaaagcctgcagccgcagagcatcgcc
acacccgagagactggagaaaagaaccatggtggtcgataggatggaaaggaatggaacg
cgtcacgaggctgtggtccctgttgatgctgcctacactcctctgccaaaagagtttgct
gcgccgtctgcaaaaagctatctgtttgagctagacgacttccagaagatttctgtgtgc
agccttgaaagagacgagagtgttcttgtgagtgcccacacaagctctggaaagacagtt
gtcgcggaatacgccattgcaatgtcattgaaaaacaagcagagggttgtgtatacgtct
ccaattaaggcgctatccaaccagaagtatagagagcttctttcggagtttggagatgtt
ggcctgatgacaggagacgtcaccatcaatccggcagcaacatgtcttgtcatgacgacg
gagatccttaggaacatgctctacagaggaggagaggttgtccgtgagatccactggatc
atctttgacgagatccactacatgagagacaaggaaagaggagttgtgtgggaggagacc
atcatactactcccaaggcatgtcaggatggtgtttctcagtgcaacgattccaaatgca
ctagagtttgcagaatggatatgccacattcaaagccaggttgttcatgttgtgtacacc
gagaagagggtgacgccccttgtccactacttccgtagcaataggctgtacaagatcaaa
gacaccaagttccacaagtcgaactttctatctgcaatgagatccatccagaagagggtt
gttgggccccgggaggtgagcgaggcaatagaggatgcgtctcttcccgttgtcgtgttt
tcgttcagaagaaaggactgtgaaaagtttgcaatgaagctggacaagagctatctaagg
gattcggaagcaaagatggtagagacgatatttaccaatgccatcatgtctcttaggaaa
gaggacagggagattccgatcatccagaacattcttcctcttctcatgagggggattggg
atacaccactcagggcttcttcccattatcaaggaggttgtcgagattctgttccaggag
gggctactgaaggtgctctttgcaaccgagaccttctcgattggactcaacatgccggcg
aagtccgtagtgtttactgcactgaagaagttcgacggagaatccatgaggttggtaagt
cctggagagtacatccagatgagcggaagggctggaagaagggggatagacagcatgggg
gttgtaataagcatagtttccgagccaattacctacaaggaggttggaaagctcttttcc
tcgtcatcggacaatcttgtaagtgcatttcgcctgacatacaacatgctgctgaacctc
atgagggttgaaggccttgaccccctgtatctgatcagcagaagcttccaccacttccag
tcatataagaaggccctcgcagaggaggagactctgcacttgatgcacaggcagctggag
agcatttgccccaacaggattgcgtctctgtatggaaggagagagcagaagagggtggaa
agaaataagaggctgtcggaggaattcagcaagtacctgaagaagggaagggttattgat
ctgtttgtacccaggaatgggccatccattacaatacgaaatgcaatagtcagcaaagtc
caagagaaggttctttgcatggttgggactgacgagggtgtttatatgtgtgggtttcct
ttgcactacatcgactgtgtgtatgccaacagagtaaagctggatataagggtgtttact
cgaaactttgagaagattacgattgaagacagcctagacaaggagataagagagatagag
gatgagatactatctatagacccgaaatggagctttgacttctgtatgatatgtggaaag
acatctatgggatgcctggcctcatgcagcaaagagttgattggagaagactctgttatg
atccaggttccagagaatgggaagaagcacagagagagccctaaatcccaaggatgcttg
gatacaaacatgaacggcgagatgggggaggcaaggtcatacttcatgaatgagatgctg
aagcaaaaatacatggacaagctctttgagctcaacagcctcaaggagatctaccatatg
aaggagtgcaagaaaatgatcgaagttctgaagaggctggagtactgcaacgatactgat
gtgctcatcaagggaagaatggcatgcgagatttcgtctggagacgagcttgtcctgaca
gaaatgatattcaatggagactttgcgggaattccggtagagcactttgttccgctgctg
tcttgcattgtgtttgaggaatgggactctgacaactttgtcttgagtgacgaaaacaag
ctgtactacaaactgttgtcttcttctgtagagaaggtctgtaatgtcttgaagtcatgt
tctcttgacgtggaccctgcagcgtatctcaaaaggttctcctatgagctgatggatgtt
gttcggatgtgggtgtgcggacacacatttgttaacatctgcagcaagacgaacatattt
gaaggaagcatcattaggacgttcaaaagacttgaggagctgcttaggcaattgagcagt
gcagccagggtcataggcaacaccgagctcgagaacatgtttgcattggggatatcaaag
atcaagagagacatagtttttgccaattccctttatatctag
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