Entamoeba histolytica: EHI_035550
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Entry
EHI_035550 CDS
T00238
Symbol
17.t00041
Name
(RefSeq) regulator of nonsense transcripts
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
ehi
Entamoeba histolytica
Pathway
ehi03013
Nucleocytoplasmic transport
ehi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ehi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
EHI_035550 (17.t00041)
03015 mRNA surveillance pathway
EHI_035550 (17.t00041)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ehi03019
]
EHI_035550 (17.t00041)
Enzymes [BR:
ehi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
EHI_035550 (17.t00041)
5.6.2.5 RNA 5'-3' helicase
EHI_035550 (17.t00041)
Messenger RNA biogenesis [BR:
ehi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
EHI_035550 (17.t00041)
mRNA cycle factors
Common to processing body (P body) and stress granule
EHI_035550 (17.t00041)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_12
AAA_11
UPF1_Zn_bind
AAA_30
AAA_19
ResIII
DEAD
SLFN-g3_helicase
SRP54
PhoH
nSTAND3
AAA_22
AAA_16
TssR_M
UvrD-helicase
AAA_25
Motif
Other DBs
NCBI-GeneID:
3410436
NCBI-ProteinID:
XP_656130
UniProt:
C4LXY5
LinkDB
All DBs
AA seq
937 aa
AA seq
DB search
MSNTTKDKVRCWYCGLADKKKLIRCGCGKYFCNGTGNGKVSHIIHHASSLKHKDLKYSDE
YIQCNLCKTRNPFVLGFIQVKQNSDMTTCLCRTCRYNTTIKNLGWDVDSWTSIVCEGKFV
NEICPQPSNEEMSIVQSISYQKMRKMAWELQNNRKKFEEETETFEELHPIYLNYHDCKQY
YHTYYPLIRLEAEADRQKRESEHLTNMTLTFDGTRTEKDIKKVVHATFQVPLNEEISITP
SDVLFFYVPMKNKSIDVHEIHNYSEFNEHERKEFIGKINTFLVGGVQSINGKDVTVLLSR
QADIPIEKQIVTPQNQQFKYSICFQWLSIPFHRKKEALLDFCRTENEPIEASMSKYLRDR
LLGMPITEMDRQMEQQFKEEKEMYLNSHPTEASLSAPNLPPLNQVQFDVVRKSFTKQLSL
IQGPPGTGKTVTSATIVYHVVQSNPGKKVLVCAPSNIAVDQLGTKITETGVKVIRVYSKS
RETEDESLYDYSLKTLMEEKLKKDKEMFALYQEYKDDPDSLDFVSTATIQKRINQIELSL
LRETDVICCTCCGALDTRLSGILEHIDTVLIDESTQADEPECLICLNNSVKQLFLVGDHC
QLGPILNSSRAKKYGLGLPMFSRLLQLGHEPYRLQFQYRMHPCLSEFSSQTFYDGVLQNG
VTALERQFPSLKYFWFKQNKPMMFIAANGKESYGSNGTSYINDEEVFIIEQIIIKMLGNK
VSPSQIGVITPYIAQKQAIISRLSLNRRISEAQLNDIEIASVDSFQGREKDFIIFSTVRS
NEISDIGFLSIPQRLNVSITRAKYGLVVVGNPETLMQNPLWCAYLQFFQNNNVLVHGQLE
NLKEYPIKLEPKEAPKAIYQFTPKVQEFSDIEPLKDIAIPFRQTRQQRSTFNPLDEFSIS
GGKEDKSDELDVTISEDESNESQSEVSDYDEDDGFTI
NT seq
2814 nt
NT seq
+upstream
nt +downstream
nt
atgagtaatacgactaaagacaaagtacgatgttggtattgtggattggctgataaaaag
aaacttataagatgtggatgtgggaagtatttttgtaatggtactggaaatggaaaagta
agtcatattattcatcatgcatcatcattaaaacataaagaccttaaatattcagatgaa
tatatccaatgtaatttatgtaaaacaagaaatccatttgtccttggatttattcaagta
aaacaaaattctgatatgacaacttgtttatgtagaacttgtagatataatactacaatt
aaaaatcttggatgggatgtagatagttggacaagtatagtttgtgaaggaaaatttgta
aatgaaatatgtccacaaccaagtaatgaagaaatgagtattgttcaaagtatttcatat
caaaaaatgaggaaaatggcatgggagttacaaaataacagaaaaaagtttgaagaagaa
acagaaacgtttgaagaattacatcctatttatttaaattatcatgactgtaaacaatat
tatcatacttattatcctcttattcgattagaggctgaagctgatagacaaaaaagagaa
tcagaacatcttactaatatgacattaacttttgatggaacaagaacagaaaaagatatc
aaaaaggttgttcatgctacttttcaagttccattaaatgaagagatttcaattacacct
agtgatgtattattcttctatgttccaatgaaaaataaatcaattgacgttcatgaaatt
cataactatagtgaatttaatgaacatgaaaggaaagaatttattggaaagattaatact
tttttagttggaggtgttcaatcaattaatggaaaggatgttacagtattattatcaaga
caagcagatattccaatagaaaaacaaatagttactcctcaaaaccaacaatttaaatat
tctatttgttttcaatggctttctattccatttcatagaaaaaaagaagcattacttgat
ttttgtagaacagagaatgaaccaattgaagcgtctatgtcaaaatatttaagagatagg
ttattaggaatgccaataactgaaatggacagacaaatggaacaacaatttaaagaagaa
aaagaaatgtatttaaatagtcatccaactgaagcgtcgttaagtgcacctaatcttcct
ccactaaaccaagttcaatttgatgttgtaagaaaatcatttacaaaacaattaagtctt
attcaaggacctcctggaactggtaaaacagttacttcagctactattgtttatcatgtt
gtacagtcaaaccctggaaagaaagttcttgtttgtgctccaagtaatattgctgtagat
caacttggaacaaaaataactgaaacaggagtaaaagtgattagagtatatagtaaatct
agagaaactgaagatgagtcgttatacgattattcgttaaaaacattaatggaagagaaa
ttgaaaaaagataaagaaatgtttgcattataccaagaatacaaagatgacccagactct
cttgattttgttagcacagcaacaattcaaaaaagaataaatcaaattgaactctctctt
ttgagagagacagacgttatttgttgcacttgttgtggagcattagacactcgattaagt
gggatattagaacatatcgatactgtattaatagatgaaagtactcaagcagatgagcca
gaatgtttaatatgtctaaataattctgtaaaacaacttttccttgttggagatcattgt
caattaggaccaattcttaattcttcaagagcaaaaaagtatggacttggacttcctatg
ttttcaagattattacaattaggacatgagccatatagacttcaattccaatatcgtatg
catccatgtttatcagaatttagttctcaaacattttatgatggtgtattacaaaatggt
gttacagcacttgaaagacaattcccttcattgaaatatttctggtttaaacaaaataaa
cctatgatgtttattgctgcaaatggaaaagagtcatatggttctaatggcacttcttac
ataaatgatgaagaagtttttattatagaacagatcattattaaaatgttaggaaataaa
gttagtccatctcaaattggtgtaattacaccctatattgctcaaaaacaagctattatt
tcaaggctgtcattaaatagaagaatttctgaagctcaattaaatgatattgaaattgca
tctgttgattctttccaaggtagagaaaaagattttattatcttttctactgtacgttca
aatgaaatatcagacattggatttctttctattcctcaaagattaaatgtaagtattact
agagcaaaatatggactagtggttgtaggtaatccagaaacattaatgcaaaatccgttg
tggtgtgcttatcttcaatttttccaaaataataatgttcttgtacatggtcaattagaa
aacttaaaagaatatccaattaaacttgaacctaaagaggcaccaaaagctatttatcaa
tttacacctaaagtacaagaatttagtgatattgaaccattaaaagatattgctattcca
tttagacaaacaagacaacaacgctcaacatttaatcctttagatgaatttagtattagt
ggtggtaaagaagataagagtgatgagttagatgttacgatttcagaagatgaaagtaat
gaaagtcaaagcgaagtgtctgattatgatgaagatgatggctttacaatttaa
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integrated database retrieval system
