Entamoeba histolytica: EHI_111060
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Entry
EHI_111060 CDS
T00238
Symbol
1.t00017
Name
(RefSeq) DNA ligase
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
ehi
Entamoeba histolytica
Pathway
ehi03030
DNA replication
ehi03410
Base excision repair
ehi03420
Nucleotide excision repair
ehi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ehi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EHI_111060 (1.t00017)
03410 Base excision repair
EHI_111060 (1.t00017)
03420 Nucleotide excision repair
EHI_111060 (1.t00017)
03430 Mismatch repair
EHI_111060 (1.t00017)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ehi03032
]
EHI_111060 (1.t00017)
03400 DNA repair and recombination proteins [BR:
ehi03400
]
EHI_111060 (1.t00017)
Enzymes [BR:
ehi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
EHI_111060 (1.t00017)
6.5.1.6 DNA ligase (ATP or NAD+)
EHI_111060 (1.t00017)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
EHI_111060 (1.t00017)
DNA replication proteins [BR:
ehi03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
EHI_111060 (1.t00017)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
EHI_111060 (1.t00017)
DNA repair and recombination proteins [BR:
ehi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
EHI_111060 (1.t00017)
NER (nucleotide excision repair)
Other NER factors
EHI_111060 (1.t00017)
MMR (mismatch excision repair)
Other MMR factors
EHI_111060 (1.t00017)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
DNA_ligase_OB_2
Motif
Other DBs
NCBI-GeneID:
3411902
NCBI-ProteinID:
XP_657595
UniProt:
C4M5H3
LinkDB
All DBs
AA seq
685 aa
AA seq
DB search
MSKRQSSLSRFFKPAKRATVGGQNNGENKSDEKGNEKKKQESIEEKNQSLQIKEEGNSFP
EQKVKTLPFKGLADCFDALENESGKLKKREIYANYLKTVITICPNDLTDVLNLTTGQIAP
TWEGKELGIGDAILKDVVKSVTGLKLSQLNDKIKELGDIGIVAQNSKKNQKLLVQPKPLT
IQGVVLRMKEILEADNSDIKKNKITALLVAAIGNEIRFILRILKGVFRIGFTDRSLPPAI
AQAVCSIRKENNRIEELTELITNAVARVPSFQYLSEHITANDPFEEFAKTNSVQLFIPFR
PMLAKPKKSITDITSRFKFPFTAEYKYDGERGQIHFNKNKIMVFTRNLENYTEKYPDVIE
AVKDAVNPNIQSFIIDCEIVAFNRETNEFQEFQILGRRAKKGVSVHSIAINVCVNVFDIV
YLNGKDLMDKPLKERRDILHSTFHEVSQRFLFARFKNIENEEDILPFFEEAINHRTEGLM
CKTLIYDAEYIPDKRTDTWYKLKKDYLNGLADTVDLVPVGAWMGEGKRAGVYGAFLLACR
DEDSGDFETVTKVGTGFSDEALQKLYEHLKTLECKEKKNVKHGDNLPDVWFEPKDVWEIK
GADLSLSLQYKAGTKLVNTEGRGVCLRFPRYIRSRDDKEVNDITTNKQIYDLYKDQPSVR
ETKDGQMKIINNDNEEESQESEEKE
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaaagacaatcctccctctcacggttctttaaacctgctaaacgagctacagtg
ggaggtcaaaataatggagaaaataaaagtgatgaaaaaggaaatgaaaaaaaaaaacaa
gagtctattgaagaaaaaaatcaaagtttacagataaaagaagaaggtaattcttttcct
gaacagaaagtaaaaactttaccattcaaaggtttagctgattgttttgatgctttagaa
aatgaaagtggaaagttgaaaaaaagagagatttatgctaattatcttaaaactgtaata
actatatgtcctaacgacttgactgatgtattgaatttaactactggacaaattgctcct
acttgggaaggaaaagaattaggaattggagatgctattttaaaagatgttgtaaaaagt
gtcactggattaaaattgagtcagttaaatgataaaataaaagaattaggtgatattgga
attgtagctcaaaactcaaagaagaaccaaaagttattagttcaaccaaagccacttaca
attcaaggagttgtacttcgtatgaaagagattcttgaagctgataatagtgatattaaa
aagaataaaattactgcgttattagttgcagctataggaaatgaaattcgttttattttg
agaatacttaaaggagtttttagaattgggtttactgataggtctttacctcctgcaata
gcacaggcagtttgttcaatcagaaaagaaaacaacagaatagaggaattaactgaatta
attacaaatgctgttgctcgtgttccatcgtttcaatatttatctgaacacattacagca
aatgatccatttgaagaatttgctaaaacaaattcagttcaattatttattccatttaga
ccaatgttagccaaacctaagaaaagtataactgatattacttctagatttaaatttcca
tttactgctgaatataagtatgatggtgaacgtggtcaaattcattttaataaaaacaaa
attatggtttttacaagaaatcttgaaaattataccgaaaaatatcctgatgttattgaa
gcagtaaaagatgcagttaatccaaatattcaatcatttattatagattgtgagattgtt
gcctttaatagagaaacaaatgaatttcaagaattccaaattcttggaagaagagcgaaa
aaaggagtatcagttcattcaattgccattaatgtttgtgtaaatgtttttgacattgtt
tatttaaatggtaaagatttaatggataaaccattaaaagaacgtcgtgacattttacat
tcaacatttcatgaagtttcacagagatttttgtttgcaagatttaagaatattgaaaat
gaggaagacattttaccattttttgaagaagcaataaaccatagaaccgaagggctaatg
tgcaaaactctcatctatgacgcagagtatattcctgacaaaaggactgacacatggtat
aaattaaaaaaagattatttaaatggattagccgatacagttgaccttgttccagttggg
gcttggatgggagaaggaaaacgggctggagtctatggagcattcttattggcatgtaga
gatgaagacagtggagattttgagacagttacaaaagttggaactggatttagtgatgaa
gctcttcaaaaattgtatgaacatttgaagactctagaatgcaaagaaaaaaagaatgta
aaacatggagacaaccttcctgatgtttggtttgaaccaaaagatgtatgggaaattaaa
ggagctgatttatcactatcattgcaatataaggctggtacaaaattagttaatacagaa
ggaagaggggtttgtttaagatttccaaggtacattagaagtagagatgataaggaagta
aatgatattacaacaaataaacaaatttatgacttatacaaagaccaaccatcagttaga
gaaacaaaagacggccaaatgaaaattataaataacgataatgaagaagaatcacaagag
tctgaagaaaaggaatga
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