Enterococcus hirae: EHR_05770
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Entry
EHR_05770 CDS
T02160
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ehr
Enterococcus hirae
Pathway
ehr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ehr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EHR_05770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ehr03400
]
EHR_05770
Enzymes [BR:
ehr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EHR_05770
DNA repair and recombination proteins [BR:
ehr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EHR_05770
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
AAA_22
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AFM70104
UniProt:
I6TA22
LinkDB
All DBs
Position
1105859..1109380
Genome browser
AA seq
1173 aa
AA seq
DB search
MDIVQLIGKDPQVKEWLNQIEEKSPRQLITGLAGSAKTLLFARAFKKTKKNLVVLMPNLY
YANQLAEDLQHVLPAEQIHSFPVDEVLSAEMAFSSPEARRERVATLNALQQKQPGVYLLP
VAALHKRLPSPKVWKQAQLTWRTGEEIAVDDLPRLLTLLGYERVEMVAKTGEYSIRGSII
DIYPINLEHPVRIELFDVEIDSMRYFEVETQRSIEKVTEIWIAPTSEQVYDQADLLHGID
RLEKLLEKKLATISEETDRQFVQDYFGQVIAQWQAGNPTEDAKLYADLLYQEETTILDYF
PTSSLFIVDDYQRIMETNREIEREAAEWQTQKISELRVFSEQVFVNDVHKLVQKEKFVTT
FFALFQKGMGNLRFQAIHNFQYRTMQQFFGQMPLLKTEMDRWRKQEQTVVIFIPTKERIR
KAEQMLRDEEILVVETEKEKLIRGQVQLVEGALQTGFELPQEKIVAITEKEIFQKTTKKQ
TRRQTVTNAERLKSYNELKAGDYVVHANHGIGKYIGMETLEVDGVHQDYMTILYQNDDKL
FIPVTQLNLIQKYVASESKAPRINKLGSSEWTKTKRKVSSKIEDIADDLIKLYAARESEK
GYAFGPDDGYQKEFENAFPYSETDDQLRSAAEIKRDMEKEKPMDRLLVGDVGYGKTEVAL
RAAFKAVKESKQVAFLVPTTILAQQHYETMLERFEGFPVNVGLLSRFRTKKQQKETIEQL
RTGQIDIVVGTHRILSKDIEFSDLGLLIVDEEQRFGVKHKERLKQLRAQVDVLTLTATPI
PRTLHMSMLGVRDLSVIETPPANRYPIQTYVMEKNPGAIREAIHREMGRGGQVFYLYNRV
ETIEQKVEEIQELVPEARIGYAHGQMTEAQLENTLFDFIEGQYDVLVTTTIIETGVDIPN
ANTLFVENADYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLQAIKDFTEL
GSGFKIAMRDLSIRGAGNLLGAQQHGFIDAVGFDMYSQMLSDAVLRKQGKNNQVEKTAVE
IDLGVDAYLPEEYVSDQRQKIEIYKRIRELDSQEMLDELEDDLLDRFGEYPEEVAHLLTI
GQIKMDGDRALIETIRKQQQTIVFNLSKAGTKRYTVEQLFEALTATKLKASLGVEKEKMV
IRLTVPNKTDEAVWLQEIQRFVKALREQKYLSA
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atggatatcgttcaattaattggtaaagatccacaggtaaaggaatggctcaaccagata
gaagaaaaatcaccaagacaattgatcactggtttagctggttcagccaaaactcttctc
tttgctcgagcgttcaaaaaaacaaagaaaaacttagtcgtattaatgcctaatctgtat
tatgcgaatcaactagcagaagatttgcaacatgttttgccagcagaacaaatacattct
tttccagtagatgaagttctttctgcggaaatggctttttcttccccagaagcaagaaga
gaacgagttgctacactaaatgccttacaacaaaaacaaccaggggtctatttattacca
gtagcagcattgcataaacgattacccagtccaaaagtttggaaacaagcccaattgact
tggcgaacgggagaggaaatagccgttgacgatctgcctcgtctattgactttattaggc
tacgaacgagttgagatggtggcaaaaacaggagagtatagtattcgtggcagcatcatt
gatatctacccgatcaatctcgaacatcccgtacgtatcgaattatttgatgtagagatt
gactccatgcgatattttgaagtagaaactcagcgctcgatcgaaaaagtaacagaaatt
tggatcgcaccaacaagtgaacaggtctacgaccaagctgatttacttcatgggatcgac
cgactggaaaagttgttagaaaagaaactagcgacgatttcagaagaaacagaccgccaa
ttcgtgcaggattattttggacaagtgatcgcgcaatggcaagcaggaaatccgacagaa
gacgcgaaactttatgctgatcttctttatcaagaagaaacgacgatccttgattatttt
ccaacaagtagtttattcattgtggatgattatcaacgaatcatggaaacaaatcgggag
atcgaaagagaagcagctgaatggcaaacacaaaaaattagtgaattacgtgtcttctca
gagcaagtctttgtcaatgatgtgcataaattagttcaaaaagaaaaatttgtgacgact
ttttttgcgctttttcaaaagggtatggggaatttacgttttcaagcgattcacaatttt
caatatcgtacgatgcaacaatttttcggtcaaatgccattattgaaaacagaaatggac
cgatggcgtaagcaagaacaaacagtagtcatctttattcctacgaaagaacggattaga
aaagcggagcagatgttacgtgatgaagagatcctagtcgtggaaaccgaaaaagaaaaa
ctgatcagaggacaagtgcaactagtggaaggggcgctgcaaacagggttcgaacttcct
caagaaaaaatagtcgcaattacggaaaaagaaattttccaaaaaacgacgaagaaacaa
acacggcgacaaaccgtaactaatgcggaacgtttaaaaagctataatgaactaaaagca
ggcgactatgtcgttcacgcaaatcacgggatcggtaaatatattgggatggaaacgtta
gaagtggatggtgtccatcaagactacatgacgatcctttatcaaaatgacgataaatta
tttattccggttacccagctgaatttgatccaaaaatatgttgcttctgaatcaaaagca
cctcgtatcaataaattaggcagtagtgaatggacgaaaaccaaaagaaaggtttcgtct
aaaattgaagatatcgcagatgatctgatcaaactatatgctgccagagaatcagaaaaa
gggtatgcgtttggaccggatgatgggtatcaaaaagaatttgaaaatgccttcccatac
tctgaaacggatgaccaattacggagtgccgcagagatcaaacgagatatggaaaaagaa
aaaccgatggatcgtttgctcgttggtgatgttggctacggtaaaacggaagtggcttta
cgagctgcttttaaagccgtcaaggaaagtaaacaagttgcctttttagttcctacgacc
attctcgcccaacaacattatgaaacgatgttggaacgttttgaaggatttccagtaaat
gtaggtctattgagtcgtttccgaacgaaaaaacaacaaaaagaaacgattgaacaatta
cgtactggacaaatcgatatcgtagtcggaacgcatcgtatcttatctaaagacattgaa
tttagtgacttagggttattgatcgttgacgaagaacagcgttttggtgtaaaacataaa
gaacgtttgaaacaactacgtgcccaagtggatgtcttgacgttgacagcgacaccgatc
ccacggacactccacatgtcaatgctcggggttcgtgatttatcagtgatcgaaacaccg
cctgccaatcgttatccgattcaaacttacgtgatggaaaaaaatcctggagcgattcgt
gaagctatccatcgagaaatggggcgtggcggtcaagtgttctatctctataatcgagta
gagacgatcgaacaaaaagtggaagaaatccaagaacttgtaccagaagcacggatcggt
tatgcgcatggtcaaatgactgaagcgcaattagaaaatacattgtttgattttattgaa
ggacaatatgatgtgttagtcacaacgacgatcattgaaacgggtgtcgatattccaaat
gcgaatacgctcttcgttgaaaatgctgattacatggggctatcgactctttatcaatta
cgaggtcgtgtgggacgaagcaaccgagtggcgtacgcctacttcatgtatgaacaacaa
aaaatcttgaatgaagtcagcgaaaaacgtcttcaagccattaaagatttcaccgaacta
ggctctggttttaaaatcgctatgcgggatttatcgatccgaggagcaggaaatctgcta
ggtgcgcagcagcacggctttattgatgctgtcggattcgacatgtattcgcaaatgtta
agtgatgctgttttacgtaaacaaggaaagaacaaccaagtggaaaaaacagcagttgaa
atcgatcttggggtcgatgcttacttgccagaagaatatgtttcggaccaaagacagaaa
attgaaatttataaacggatcagggaacttgattcacaagaaatgcttgatgaattagaa
gatgatcttttagaccgttttggggaataccctgaagaggtggcacatctcttaacgatt
ggccaaatcaaaatggatggcgatcgcgccttgattgaaacaattcgcaagcaacagcag
actatcgtctttaatctaagtaaagcaggaacaaaacgctatactgtagaacagttattt
gaagctttgactgcaacaaaactaaaagcaagtttaggtgtagaaaaagaaaaaatggtg
attcgactaacggttcctaacaagaccgatgaagcagtttggttgcaagaaatccaacgt
tttgtcaaagctttacgtgaacaaaaatatctgtctgcttag
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integrated database retrieval system
