Eurypyga helias (sunbittern): 104503574
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Entry
104503574 CDS
T08356
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
ehs
Eurypyga helias (sunbittern)
Pathway
ehs03013
Nucleocytoplasmic transport
ehs03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ehs00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104503574 (UPF1)
03015 mRNA surveillance pathway
104503574 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ehs03019
]
104503574 (UPF1)
Enzymes [BR:
ehs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
104503574 (UPF1)
5.6.2.5 RNA 5'-3' helicase
104503574 (UPF1)
Messenger RNA biogenesis [BR:
ehs03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
104503574 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
104503574 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
104503574
NCBI-ProteinID:
XP_010146900
LinkDB
All DBs
Position
Unknown
AA seq
1070 aa
AA seq
DB search
LEMYHLKVELHYVDIGAFTCGSAIAEGGVNGPDGILQNGAVDDNVAKTSQLLAELNFEED
EEDTYYTKDLPVHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEV
TLHKDGPLGETVLECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQ
WQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEE
PQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLP
KTDSDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHN
FQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGL
PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVD
QLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELS
SADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMV
PVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPAL
SAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRT
EAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDA
FQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHL
LNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYD
RSSQGRPSNMYFQTHDQIGMISAGPSHVTAMNIPIPFNLMMPPMPPPGYFGQANGPAAGR
GAPKGKTGRGGRQKNRFGIPGTSQSNLPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMS
QPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3213 nt
NT seq
+upstream
nt +downstream
nt
cttgaaatgtaccacttgaaagtagaactgcactatgtggatataggtgccttcacctgt
gggtcggctattgctgagggtggggtgaacgggcctgatggcattctgcagaatggagct
gtggacgataacgtggctaaaaccagccagcttctggcagaactgaattttgaagaagat
gaagaagatacctattacacaaaggatcttcctgtgcatgcttgcagttactgtggtatc
catgaccctgcttgtgtggtttactgtaacaccagcaaaaagtggttctgtaacgggcgt
ggaaatacatctggcagccacattgttaatcatcttgtgagagccaagtgcaaagaggtg
actctccataaagatggaccgctgggagagaccgtcttggaatgttataactgtggatgt
cgtaatgtgtttctccttggctttatcccagctaaggcagactccgtggttgttttgctc
tgcaggcagccatgtgccagtcagagcagtctaaaggatattaattgggacagttcgcag
tggcagcctcttatccaagatcgctgtttcctttcctggctggtaaagattccatctgaa
caggaacagttgagagcacgtcagattacagctcagcagatcaacaaactggaggaactt
tggaaggaaaatccatctgcaacccttgaggacttagaaaagcctggtgttgatgaagaa
ccacagcatgtcctgcttagatatgaagatgcttatcaataccaaaatatatttgggcct
ttagtcaagcttgaggcagactatgacaagaaactcaaggagtctcagacccaagataac
atcacggtcagatgggacctgggcttgaacaagaaaagaattgcttatttcactttgcca
aagacggactcagatatgcgtcttatgcaaggagatgagatctgcttgaggtataaagga
gacctggccccgttgtggaaaggaattggtcatgtaatcaaagttcctgataattatggt
gacgagatagccatcgagctgaggagcagcgttggagcgcctgtggaagttactcataac
ttccaagtggattttgtgtggaagtctacttcgtttgacagaatgcagagcgctttaaaa
acattcgctgtggatgagacttcagtgtctgggtacatctatcacaaactgttgggtcat
gaggtagaagatgtaattattaaatgccagttgccaaagcgctttacagcacaaggactt
cctgatctcaaccattctcaggtttatgctgtgaagactgtcctgcagcgtcctctgagc
cttattcagggtcctcctggtaccggaaaaacagtgacgtcagccacaatcgtctatcat
ctggctagacagggcaatgggcctgtgttagtctgtgctccgagtaatatcgctgtagat
cagttgactgagaagatccatcaaactggactgaaagtggttcgtctgtgtgctaaaagt
cgtgaggcaattgactctcctgtatccttcttggcattgcataaccagatcagaaacatg
gacagcatgccagagcttcagaaactgcagcaacttaaagacgaaactggagagctgtcg
tctgctgatgagaaacgttaccgtgcgttgaaacgaacggcagagcgtgaattacttatg
aacgcagatgtgatctgttgcacttgtgtgggagctggtgatccaagacttgcaaaaatg
cagttccgctccattctgattgatgaaagcacgcaggctacggagccagagtgcatggtg
ccagttgtcctgggagcaaaacagcttattcttgtaggtgaccactgccagcttggtcct
gttgtgatgtgtaaaaaggcagccaaggctggcctgtctcagtctctcttcgagaggctc
gtggtgctggggattcgcccgattcgcctgcaggtgcagtatcgcatgcaccctgcgctc
agtgctttcccctccaacatcttctatgagggttcactccagaacggtgtcactgcggcg
gaccgtgtgaaaaaagggtttgatttccagtggcctcagccagataagcccatgtttttc
tacgttacacaaggacaggaagaaattgccagctcgggcacctcttacttgaacaggacg
gaagctgccaatgtggagaagataactacaaagctactgaaggctggtgccaaacccgat
cagattggcattattaccccttacgaagggcagcgatcctacctggtgcagtacatgcag
ttcagcggctccttgcacacgaagctctaccaggaagtggaaattgcaagtgtggatgcc
ttccaggggcgagagaaggactttattatcctttcttgtgtgagggccaacgaacaccag
ggaatagggttcctgaatgaccccaggcgtcttaacgtagctcttaccagagcaaggtac
ggagtaattattgttgggaacccaaaagcgctgtctaaacaacccctttggaatcacctg
ctgaattactacaaggagcagaaggttctggtggagggaccactgaataacctccgggaa
agccttatgcagttcagcaagccccggaaactcgttaataccatcaacccgggtgcccgt
ttcatgactactgccatgtatgatgcacgggaggctattattccaggatctgtctatgac
cggagcagtcaagggcgcccatccaacatgtacttccagacccacgaccagatcgggatg
atcagcgccggccccagccacgtcaccgctatgaacattcccatccccttcaacctcatg
atgccaccgatgccgcccccgggctacttcggccaggccaacggaccagccgcaggacgt
ggggcgccgaaaggaaagaccggtcgtggtgggcgccagaaaaaccgttttgggattcct
ggaactagtcagtcaaaccttccgaatagccaagcgagccaagatgtggtgtcccagcct
ttctcccagggcccgctgacacagggctacatctccatgagtcaaccatcacagatgagt
cagcctgggctctcccaacccgaattatcacaggacagttaccttggtgatgagtttaag
tctcagattgacgtggcgctgtcgcaggactccacttaccagggtgaacgcgcgtatcaa
catggcggagtgacgggactgtcacagtattag
DBGET
integrated database retrieval system
